PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00001713-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family Whirly
Protein Properties Length: 245aa    MW: 27003.1 Da    PI: 10.0502
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00001713-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly184.42e-57562041139
                 Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakg.... 84 
                            s+yk+kaal+ ++ +p+f++l++g  +++r+G ++l++ ++++erkydWek+q+falsatev++l++l++k+sceffhdp++ +    
  SMil_00001713-RA_Salv  56 SIYKGKAALSADPLLPKFTKLETGDYRVERRGVIMLTFWPSIGERKYDWEKRQKFALSATEVGSLINLGPKDSCEFFHDPSMLSrcei 143
                            7*******************************************************************************97432333 PP

                 Whirly  85 ......sneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                                  sn+G+vrk+l+++ ++dGsG+fv+l+v +++ ++n++f+vPv+ aefav+r++++
  SMil_00001713-RA_Salv 144 ncnlihSNAGQVRKSLSIKAHADGSGYFVSLTVVSNVHNTNDRFVVPVTGAEFAVMRTAFS 204
                            3334449***************************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.101.6E-6747219IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544478.63E-6049221IPR009044ssDNA-binding transcriptional regulator
PfamPF085361.3E-5357201IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MLKLSKLLLH SSRASKSMLG VAANDFKLFS GIATQAWMST ATAKFEPSAK IFAPYSIYKG  60
KAALSADPLL PKFTKLETGD YRVERRGVIM LTFWPSIGER KYDWEKRQKF ALSATEVGSL  120
INLGPKDSCE FFHDPSMLSR CEINCNLIHS NAGQVRKSLS IKAHADGSGY FVSLTVVSNV  180
HNTNDRFVVP VTGAEFAVMR TAFSFALPHI MGWDKLVVKV PFSGNGESSG SARVVPQAQT  240
SEWDR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3n1h_A1e-86492179167StWhy2
3n1i_A1e-86492179167protein StWhy2
3n1j_A1e-86492179167Protein StWhy2
3n1k_A1e-86492179167protein StWhy2
3n1l_A1e-86492179167protein StWhy2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095185.11e-116single-stranded DNA-bindig protein WHY2, mitochondrial isoform X2
SwissprotD9J0346e-92WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A4D8Z3P91e-136A0A4D8Z3P9_SALSN; Uncharacterized protein
STRINGMigut.C01402.1.p1e-107(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA97822228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.13e-86WHIRLY 2