PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00001654-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 407aa    MW: 44527.3 Da    PI: 4.4678
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00001654-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.39e-09120145227
                    AP2   2 gykGVrwdkkrgrWvAeIrdpseng.k 27 
                            +y+G+r+++ +g+W+AeIrdp ++g k
  SMil_00001654-RA_Salv 120 QYRGIRQRP-WGKWAAEIRDPGKGGkK 145
                            69*******.**********9776632 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.77E-5120146IPR016177DNA-binding domain
SMARTSM003803.6E-5120157IPR001471AP2/ERF domain
PROSITE profilePS5103211.561120202IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-9120142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MCGGAIISDI VAPASRSSTR LTADLLWGSA VAGLSRRKIQ GSYRHSKQLR SAPIIDLEDD  60
FEADFQEFKD HSDNENETGA KKAFAFSAAK SSSLKGMPPT DTVESDEEAE KSSKRKRKNQ  120
YRGIRQRPWG KWAAEIRDPG KGGKKAKVNF PEYAPPAASR CTVKANSHQE VLKESPEAAQ  180
PYENESLNFM SMLNDDYYDS FGVIEEKPQM KSFGYADTYP SADESNLKSL PPTDGSNVCF  240
SSDQESNSLD CSGFAWGENC LKTSEISSVL STVLEDEQAQ FMEDAGPAKK AKTTPENLVP  300
SDEKAANKLS DDLSAFDSQM KLFQMPYLEG NWDASLEAFL NGDGAQDGAS AMDIWSFDDV  360
PAMLGSAFVA GDEETATFQS MHKAMDGVVL EPLNVHYIGK NLGEIRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072679.10.0ethylene-responsive transcription factor RAP2-12-like isoform X1
TrEMBLA0A2U8UYN40.0A0A2U8UYN4_SALMI; Ethylene-responsive transcription factor RAP2-12-like protein
STRINGMigut.I01124.1.p1e-155(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14462466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.32e-41related to AP2 12