PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00001566-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | WRKY | ||||||||
Protein Properties | Length: 258aa MW: 29269.7 Da PI: 8.4538 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.3 | 2.8e-32 | 140 | 197 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYY+Cts++C+vkk +ers ed ++v++tY g+Hnh+ SMil_00001566-RA_Salv 140 EDGYRWRKYGQKAVKNSPFPRSYYKCTSQKCSVKKLIERSYEDSTMVITTYLGRHNHH 197 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.4E-33 | 124 | 199 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.01E-28 | 131 | 199 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.882 | 134 | 199 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.0E-36 | 139 | 198 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.0E-24 | 140 | 197 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MSFSSKNKIE DRSSPMSDAD NYKMGSQEGL QFSFLADHTS FMYNHPKQQN PSDTMSFFYN 60 TPSPSPAFDP SCSSSEPPLF AVNKNLGENP NSSEAAAVEE ADSCPKHCKA GDLKPKKVKE 120 KKAREARFAF VTKSEVDNLE DGYRWRKYGQ KAVKNSPFPR SYYKCTSQKC SVKKLIERSY 180 EDSTMVITTY LGRHNHHSPA TLRGRAAVLP PPLQPQFGFH NFPENYFTSI HPNFPQLEIN 240 PQFLADQFNM DSSFLQHP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-25 | 132 | 200 | 10 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 4e-25 | 132 | 200 | 10 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM823137 | 0.0 | KM823137.1 Salvia miltiorrhiza WRKY protein (WRKY14) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011098088.1 | 1e-54 | probable WRKY transcription factor 71 isoform X1 | ||||
TrEMBL | A0A0D5YA05 | 0.0 | A0A0D5YA05_SALMI; WRKY protein | ||||
STRING | Migut.M00487.1.p | 5e-50 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1485 | 24 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29860.1 | 2e-42 | WRKY DNA-binding protein 71 |