PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00001536-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 463aa MW: 51859.5 Da PI: 7.8849 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 87.5 | 2e-27 | 125 | 227 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkw 76 fY+eYA++vGF++ +++s++sk+++e+++++f Cs++g+++e +k+ +e++ +ra +t+Cka+++vk+++dgkw SMil_00001536-RA_Salv 125 FYQEYARSVGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYEKSlnrprsrqgsnqdAENATGRRACAKTDCKASMHVKRRSDGKW 212 9*****************************************999999***999988776677779********************** PP FAR1 77 evtkleleHnHelap 91 ++++e+eHnHel p SMil_00001536-RA_Salv 213 IIHRFEKEHNHELLP 227 ************975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.2E-25 | 125 | 227 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 463 aa Download sequence Send to blast |
MRLFVLTFVM LYASAHDRIM NVVVATQHLI AGQRVVVMDI DLRLPSGEHD KELEEPNGIV 60 NMLDGEEKPL NVDGVGESMG DEDKLHVEDG DDVNSPLPDI DFKDVTILEP LPGMEFGSHG 120 DAYAFYQEYA RSVGFNTAIQ NSRRSKTSRE FIDAKFACSR YGTKREYEKS LNRPRSRQGS 180 NQDAENATGR RACAKTDCKA SMHVKRRSDG KWIIHRFEKE HNHELLPAQA SVLNMTPEAN 240 SKKAGIWQWM QFLCRHAMIV LQICGISTIP LQYILKRWTK DAKSRYSIEG SEQVQSRLQR 300 LSLRALGDAF ENCLNANYSN KNLLEAGPSA SPGILCIEDD IQSGSLSKTN KKKNATKKRK 360 EKLSSRPVNL DGFFGHHQSA PGMVQLNLMG PTRDSYFGNQ PAIQGLGQLN SIAPTHDGYY 420 GSQPAMPGMG HMEFFRTPNF GYGIRDDPNV RSAQLHDDAT RHA |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:17012604, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:18715961, ECO:0000269|PubMed:22634759}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. Up-regulated by white light. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011100396.1 | 1e-123 | protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1 | ||||
Swissprot | Q9LIE5 | 6e-69 | FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
TrEMBL | A0A2P5Q0G2 | 1e-157 | A0A2P5Q0G2_GOSBA; Uncharacterized protein | ||||
STRING | Migut.M00094.1.p | 1e-112 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA496 | 21 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G22170.2 | 7e-71 | far-red elongated hypocotyls 3 |