PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00001391-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

M-type_MADS

Protein Properties

Length: 66aa MW: 7575.9 Da PI: 10.6938

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00001391-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	86.4	1.6e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ks rqvtfskRrng+lKKA+ELSvLCd ++ ii+s +gkly y+s SMil_00001391-RA_Salv 9 KRIEDKSSRQVTFSKRRNGLLKKAKELSVLCDLDIGAIIYSCRGKLYHYCS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	8.89E-28	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	7.7E-37	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	29.45	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	9.21E-34	2	60	No hit	No description
PRINTS	PR00404	8.4E-27	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.8E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.4E-27	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.4E-27	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 66 aa Download sequence Send to blast
MGRRKLEIKR IEDKSSRQVT FSKRRNGLLK KAKELSVLCD LDIGAIIYSC RGKLYHYCST 60 NRSLGA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	3e-19	1	61	1	61	MEF2C
5f28_B	3e-19	1	61	1	61	MEF2C
5f28_C	3e-19	1	61	1	61	MEF2C
5f28_D	3e-19	1	61	1	61	MEF2C
6bz1_A	4e-19	1	61	1	61	MEF2 CHIMERA
6bz1_B	4e-19	1	61	1	61	MEF2 CHIMERA
6bz1_C	4e-19	1	61	1	61	MEF2 CHIMERA
6bz1_D	4e-19	1	61	1	61	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2). {ECO:0000269\|PubMed:14704206}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022881723.1	8e-33	MADS-box transcription factor 7-like
Swissprot	Q40702	2e-24	MADS2_ORYSJ; MADS-box transcription factor 2
TrEMBL	A0A4D8YAX9	2e-33	A0A4D8YAX9_SALSN; MADS-box transcription factor, plant
TrEMBL	A0A4D9BPZ6	6e-33	A0A4D9BPZ6_SALSN; Uncharacterized protein
STRING	Solyc05g015730.1.1	1e-27	(Solanum lycopersicum)
STRING	XP_009795052.1	2e-26	(Nicotiana sylvestris)
STRING	Migut.K00958.1.p	2e-26	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03710.3	1e-25	MIKC_MADS family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]