PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00001264-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | C2H2 | ||||||||
Protein Properties | Length: 231aa MW: 24911.1 Da PI: 8.8326 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.3 | 0.00024 | 81 | 103 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H SMil_00001264-RA_Salv 81 FSCNYCRRKFYSSQALGGHQNAH 103 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.59E-6 | 78 | 108 | No hit | No description |
PROSITE profile | PS50157 | 11.385 | 81 | 108 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 83 | 103 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MMPPNLNMES EDESEVSSQV ASNASVYSKE ESRNASSCLD DSFKPVVLDL TLGINGCGEP 60 DLKVPTEAVA NHPPPPSSRV FSCNYCRRKF YSSQALGGHQ NAHKRERTLA KRAMRMEMFS 120 DRYASLASLP LHGSAFRSLG IQAHASMHPE HGIRGGGGGG GGVVAELGLL IKATSDCPSI 180 WSTMKGSCRG REASDKWRAS GETRPSTLGS APIWRKGQLH LRGQTSHPFL T |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011070525.1 | 2e-64 | zinc finger protein 4 | ||||
Refseq | XP_011070527.1 | 2e-64 | zinc finger protein 4 | ||||
Refseq | XP_011070528.1 | 2e-64 | zinc finger protein 4 | ||||
Refseq | XP_011070529.1 | 2e-64 | zinc finger protein 4 | ||||
Refseq | XP_011070530.1 | 2e-64 | zinc finger protein 4 | ||||
Refseq | XP_011070531.1 | 2e-64 | zinc finger protein 4 | ||||
TrEMBL | A0A4D9A7Z2 | 8e-88 | A0A4D9A7Z2_SALSN; Uncharacterized protein | ||||
STRING | PGSC0003DMT400075895 | 1e-56 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1283 | 23 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66140.1 | 3e-28 | zinc finger protein 4 |