PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00001187-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Trihelix

Protein Properties

Length: 294aa MW: 33284.8 Da PI: 4.33

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00001187-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	31.4	4.9e-10	15	82	2	69
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 Wt +e l L++ + +e++ +++ ++W+++ +++ + ++r+ +qCk kw+ + + y++ k+ge SMil_00001187-RA_Salv 15 WTVEESLILVNEISAIESEWGATLPSFQKWQQIVENCNALDVNRNLNQCKRKWDAMLTAYRRAKQGEP 82 ****************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.0E-9	14	96	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.4E-4	15	71	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.248	15	71	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MSESHRTRSK AAPDWTVEES LILVNEISAI ESEWGATLPS FQKWQQIVEN CNALDVNRNL 60 NQCKRKWDAM LTAYRRAKQG EPPDRSFPAE LYAAVDQCVS TNGKRNDGGG EADEEEDGDA 120 TVVEEEEEQV VMETDPDSDP EAQGQLTKLL FETGSKKQRC RMKRQKRRLE TQNPWGYFTS 180 TKKPHEESSS KQEEVKNTNN VVESSPEEIS TELKEQTESE EQTMAMMLWE NALQINAILE 240 GNLADDVDYK LAGLKNAEAV QIDFTRRQGD KLIDCLGNIS TTLNQLCDLV QKCN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	158	163	RCRMKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022874386.1	1e-110	trihelix transcription factor ASR3
TrEMBL	A0A4D8ZR27	1e-175	A0A4D8ZR27_SALSN; Uncharacterized protein
STRING	Migut.E01408.1.p	1e-108	(Erythranthe guttata)
STRING	Migut.E01420.1.p	1e-108	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8360	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	2e-32	sequence-specific DNA binding transcription factors