PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00001087-RA_Salv
Common NameMYB13
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 257aa    MW: 29147.5 Da    PI: 5.4486
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00001087-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.81.6e-151461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+W+++Ede+l  +++++G  +W++ +++ g++R++k+c++rw +yl
  SMil_00001087-RA_Salv 14 KGAWSEDEDEKLRAYINRYGHWNWRLLPKYAGLKRCGKSCRLRWVNYL 61
                           79******************99************************97 PP
2Myb_DNA-binding521.6e-1667110146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            rg +++eE e+ v+++++lG++ W++Ia+ ++ gRt++++k++w++
  SMil_00001087-RA_Salv  67 RGDFSKEEKEIVVKLHAELGNK-WSAIAEQLP-GRTDNEIKNFWHT 110
                            899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-21764IPR009057Homeodomain-like
PROSITE profilePS5129414.526961IPR017930Myb domain
SuperFamilySSF466891.16E-2811108IPR009057Homeodomain-like
SMARTSM007173.3E-121363IPR001005SANT/Myb domain
PfamPF002495.1E-141461IPR001005SANT/Myb domain
CDDcd001674.89E-91661No hitNo description
PROSITE profilePS5129423.43262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.0E-2465115IPR009057Homeodomain-like
SMARTSM007171.1E-1466114IPR001005SANT/Myb domain
PfamPF002491.1E-1467110IPR001005SANT/Myb domain
CDDcd001676.86E-1070110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MVRPPSIDSN GMKKGAWSED EDEKLRAYIN RYGHWNWRLL PKYAGLKRCG KSCRLRWVNY  60
LKPGVKRGDF SKEEKEIVVK LHAELGNKWS AIAEQLPGRT DNEIKNFWHT RIERRRKKSP  120
AAKPTISKAN SLSTPQNQQQ SLSLPILDDA SLSPNSSHQD ELELMLSAVL EAHDSAQNEC  180
FAAAAAAAAA AFNEEEFDYP ELRSSELSCS GSSYSWTVDD DATSSYYVAQ AEEEGLLLSY  240
DPLLRFFDYQ NETGLFW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24121155107B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0593670.0KF059367.1 Salvia miltiorrhiza MYB-related transcription factor (MYB13) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100326.11e-78myb-related protein Myb4
TrEMBLA0A075BMN91e-173A0A075BMN9_SALMI; MYB-related transcription factor
STRINGMigut.M00365.1.p1e-66(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.14e-53MYB-like 102