PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00001018-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family GATA
Protein Properties Length: 316aa    MW: 35247.5 Da    PI: 9.147
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00001018-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.32.1e-18225258134
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                            C++C  tkTp+WR+gp g+ktLCnaCG++yr+ +
  SMil_00001018-RA_Salv 225 CTHCEITKTPQWREGPLGPKTLCNACGVRYRSGR 258
                            *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.306219255IPR000679Zinc finger, GATA-type
SMARTSM004018.3E-15219269IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-15222282No hitNo description
Gene3DG3DSA:3.30.50.102.6E-14223256IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.44E-15224271No hitNo description
PfamPF003203.6E-16225258IPR000679Zinc finger, GATA-type
PROSITE patternPS003440225250IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MAKVDPYGCW DGAIDGDEEL ENMLGSILDF PDFPMEGLEA EGFSGDWDAS KSQYLGPIPM  60
DVLMGPPAVA QTKVETGPQV FMQRPVALIG SAYLPMYLYA YYILLFPQML IKPIKIDAAP  120
EAKKHSYWFG DDAAGSCIRR QNKSAEVQET GTFQSQSPVS VLESSSSSLT GKSLLKPHTA  180
KRARSKRARP SGPSKRRKTH PSHLIMHSRQ MQQQQQLNCV PPKKCTHCEI TKTPQWREGP  240
LGPKTLCNAC GVRYRSGRLY PEYRPAASPT FVPTLHSNSH KKVIEMRNKG KKIEQPSMSP  300
QLEFIPVSSY LFDPIC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194199KRRKTH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089919.11e-111GATA transcription factor 11 isoform X1
RefseqXP_011089920.11e-111GATA transcription factor 11 isoform X2
TrEMBLA0A4D8ZMJ11e-150A0A4D8ZMJ1_SALSN; Uncharacterized protein
STRINGMigut.N02591.1.p5e-67(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31342149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.24e-38GATA family protein