PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00000936-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family CO-like
Protein Properties Length: 430aa    MW: 46981.8 Da    PI: 6.5789
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00000936-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.71.6e-05333535
               zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHk 35
                            C+ ++e +++l+C+ ++  lC +C ++ H 
  SMil_00000936-RA_Salv  3 SCDFCGERQAILYCRADSAKLCLSCDQHVHC 33
                           7******99******************9994 PP
2zf-B_box29.41.7e-094489342
               zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                            ++C+++  +++++ C +++  lC+dC    H +      H+++p+
  SMil_00000936-RA_Salv 44 SQICDNCAAEPASFRCSTDGLVLCQDCDWDAHGSrlvaaaHDRCPI 89
                           579**************************99*44899999999886 PP
3CCT64.14.2e-22382425144
                    CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                            R +a++RYkeK+ktR+++K+irYesRKa+A++R+RvKGrFvk+ 
  SMil_00000936-RA_Salv 382 RGNAMQRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKAH 425
                            7789*************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.4E-8146IPR000315B-box-type zinc finger
PROSITE profilePS501199.983146IPR000315B-box-type zinc finger
CDDcd000213.76E-7232No hitNo description
PROSITE profilePS5011910.0254289IPR000315B-box-type zinc finger
PfamPF006433.6E-74589IPR000315B-box-type zinc finger
CDDcd000212.96E-74689No hitNo description
SMARTSM003360.194789IPR000315B-box-type zinc finger
PfamPF062031.7E-16382424IPR010402CCT domain
PROSITE profilePS5101714.912382424IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MVSCDFCGER QAILYCRADS AKLCLSCDQH VHCANALSKK HLRSQICDNC AAEPASFRCS  60
TDGLVLCQDC DWDAHGSRLV AAAHDRCPID SFSGCPSAFE LAAAWGLEIE EKKPASCEWG  120
GLLEELMVPN ASSMIYSDCG GELVKKKKNP SCGKQKQVIL KQLIELIADG GGGDGEDVGP  180
GTPSGGAWRQ ESFCGQYEEQ PQEQQQELPQ GGGFTSLLML QTPANQKEER NMLWNTTACD  240
HSAQIWDFNL GQLRGHEESS PVELEFGGSD VYTMKRYGEL LKEASLAKRR GVDVSGVNCS  300
ITQEDIIPFN SATNNQTPSQ GPATSESNNA PVARPSSCSG LTKPESLGGS KDMQFTSQSI  360
LMTSESVAAM SKSDMELLAK NRGNAMQRYK EKKKTRRYDK HIRYESRKAR ADTRKRVKGR  420
FVKAHEAPAG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086854.20.0LOW QUALITY PROTEIN: zinc finger protein CONSTANS-LIKE 14
TrEMBLA0A4D9ADB70.0A0A4D9ADB7_SALSN; Uncharacterized protein
STRINGMigut.K01031.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67032126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.11e-99B-box type zinc finger protein with CCT domain