PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00000930-RA_Salv
Common NameMYB73
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 280aa    MW: 31338.3 Da    PI: 7.9422
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00000930-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.71.5e-191461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEde+lv+++k++G g+W++ ++  g+ R++k+c++rw +yl
  SMil_00000930-RA_Salv 14 KGPWTPEEDEKLVEYIKKHGQGSWRSLPKLAGLLRCGKSCRLRWTNYL 61
                           79******************************99************97 PP
2Myb_DNA-binding50.64.5e-1667112148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg++T++E++l +++++ lG++ W++Ia+ ++ gRt++++k+ w+++l
  SMil_00000930-RA_Salv  67 RGPFTADEEKLVIQLHAILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 112
                            89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.2E-25562IPR009057Homeodomain-like
PROSITE profilePS5129426.284965IPR017930Myb domain
SuperFamilySSF466891.91E-3111108IPR009057Homeodomain-like
SMARTSM007178.1E-161363IPR001005SANT/Myb domain
PfamPF002497.3E-181461IPR001005SANT/Myb domain
CDDcd001672.67E-121661No hitNo description
Gene3DG3DSA:1.10.10.601.6E-2563116IPR009057Homeodomain-like
PROSITE profilePS5129420.166116IPR017930Myb domain
SMARTSM007171.2E-1466114IPR001005SANT/Myb domain
PfamPF002495.1E-1567112IPR001005SANT/Myb domain
CDDcd001677.06E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MGRAPCCDKK GLKKGPWTPE EDEKLVEYIK KHGQGSWRSL PKLAGLLRCG KSCRLRWTNY  60
LRPDIRRGPF TADEEKLVIQ LHAILGNRWA AIASQLPGRT DNEIKNLWNT HLKKRLLQMG  120
IDPRTHEASS SSAACPQSRH MAQWETARLE AEARLSKESM FLASSSPPGA ATSRNPEGGD  180
YFLRLWNSEV GETFRKLRKE ASGRTDESPS SSSTKCSTLS EATVKVEKSS CVEDVSCSSN  240
EMEEDSSESA LQLLLDFPTN NDMSFLSQPD CFGFFPPNFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0594270.0KF059427.1 Salvia miltiorrhiza MYB-related transcription factor (MYB73) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011091956.11e-129myb-related protein Zm38 isoform X2
SwissprotQ9M2D91e-123MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A059PSR10.0A0A059PSR1_SALMI; MYB-related transcription factor
STRINGMigut.N01433.1.p1e-127(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-112myb domain protein 17
Publications ? help Back to Top
  1. Li C,Lu S
    Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza.
    BMC Genomics, 2014. 15: p. 277
    [PMID:24725266]