PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00000866-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 303aa    MW: 33981.7 Da    PI: 5.4402
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00000866-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.61.9e-151461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg+WT+eEd +lv ++k  G g+W++ ++  g+ R++k+c++rw +yl
  SMil_00000866-RA_Salv 14 RGKWTAEEDGKLVSYIKANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                           89******************************99************97 PP
2Myb_DNA-binding60.14.8e-1967112148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg++T++E+e +v+++k lG++ W++Ia++++ gRt++++k++w+++l
  SMil_00000866-RA_Salv  67 RGNFTEQEEETIVKLHKTLGNR-WSLIASHLP-GRTDNEIKNYWNSHL 112
                            89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-21564IPR009057Homeodomain-like
PROSITE profilePS5129414.67961IPR017930Myb domain
SuperFamilySSF466893.15E-2811108IPR009057Homeodomain-like
SMARTSM007176.0E-101363IPR001005SANT/Myb domain
PfamPF002491.0E-131461IPR001005SANT/Myb domain
CDDcd001675.53E-81661No hitNo description
PROSITE profilePS5129425.55262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-2665115IPR009057Homeodomain-like
SMARTSM007173.6E-1866114IPR001005SANT/Myb domain
PfamPF002493.9E-1767112IPR001005SANT/Myb domain
CDDcd001677.92E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051555Biological Processflavonol biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGRSPCCEKT GLNRGKWTAE EDGKLVSYIK ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRADVKRGNF TEQEEETIVK LHKTLGNRWS LIASHLPGRT DNEIKNYWNS HLSRTIYRYR  120
FIGEATLTQA DMIKIAPKSR CRDHRRGKNA AQHHVASAQV PAEERNDEGK SDSFSSCDTL  180
STKGSPDALM LSPNDAQEVE EMLGPSTEID ADILMHLNNF PGNEKTNQCH GDGDGFMAYT  240
AASEERDCCG DGGWNSNLDL ASLYECLSPI VSYFNDDVLQ WDRNVAGGEQ GLWNEEDNIL  300
IWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071652.11e-103transcription factor MYB14
TrEMBLA0A2G9GJ781e-100A0A2G9GJ78_9LAMI; Transcription factor, Myb superfamily
STRINGMigut.N00057.1.p1e-95(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.13e-67myb domain protein 111