PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00000843-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family GATA
Protein Properties Length: 283aa    MW: 31167.7 Da    PI: 6.9321
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00000843-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.97.6e-20202236135
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            Cs+Cg+tkTp+WR gp g+ktLCnaCG++y++ +l
  SMil_00000843-RA_Salv 202 CSHCGVTKTPQWRAGPLGSKTLCNACGVRYKSGRL 236
                            *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169926.5E-7821281IPR016679Transcription factor, GATA, plant
SMARTSM004013.7E-16196250IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.215196232IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.52E-15197259No hitNo description
Gene3DG3DSA:3.30.50.103.1E-15200234IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.18E-15201249No hitNo description
PROSITE patternPS003440202227IPR000679Zinc finger, GATA-type
PfamPF003201.3E-17202236IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
LSPFSHLQEM ESAGGDSRSG FEAVTDEFSG AAGGGDDFSV DELLDFSNGY SETEEQQMEE  60
QRETEKGKVK VKTTPLFRER EGAVSLSKRE DIGSFHDGEL CFQAEGLESL EWVSHFMDDS  120
FPDYSLAGKL PAAEPQPCFT TPVQTKARTK RARAGLRVWH VLSSTEHSAS PPSSTSSTTS  180
FPLENAPAKK KKKSADGQPR RCSHCGVTKT PQWRAGPLGS KTLCNACGVR YKSGRLLPEY  240
RPACSPTFST EMHSNNHRKV LEMRRKKETE VQTTGLPPPV QSF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090418.11e-104GATA transcription factor 5
SwissprotQ9FH571e-57GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A2G9GNN91e-100A0A2G9GNN9_9LAMI; GATA transcription factor
STRINGMigut.L00033.1.p3e-88(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.23e-58GATA transcription factor 5