PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00000822-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | ERF | ||||||||
Protein Properties | Length: 209aa MW: 22766.5 Da PI: 7.7621 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.8 | 2.1e-16 | 48 | 96 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +++g+Wv+eIr+p++ ++r++lg++ ++e+Aa+a++ a+++l+g SMil_00000822-RA_Salv 48 IYRGIR--SRSGKWVSEIREPRK---TRRVWLGTYPSPEMAAAAYDVAALALKG 96 69***6..678*********843...5***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.4E-10 | 47 | 96 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.98E-15 | 47 | 106 | No hit | No description |
SMART | SM00380 | 3.8E-26 | 48 | 110 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.981 | 48 | 104 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-25 | 48 | 106 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-17 | 48 | 105 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.8E-6 | 49 | 60 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-6 | 86 | 106 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MADSPRHSQQ RHPSSPTPLP PLAPSPKRAE KATKTCSAAS SSSGKHPIYR GIRSRSGKWV 60 SEIREPRKTR RVWLGTYPSP EMAAAAYDVA ALALKGGGAA LNFPDHAASF PVPYSSSAQD 120 IRRAAAAAAE LMRPDDERRR SDETAANVEM VRSGGGGHDQ YVDEEELFYM PNLLVDMAEG 180 MLVSPPRMAS PPPNEWPEIF GGDSLWNHF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011072131.1 | 2e-65 | ethylene-responsive transcription factor ERF027 | ||||
Swissprot | Q9FJ90 | 7e-46 | ERF25_ARATH; Ethylene-responsive transcription factor ERF025 | ||||
TrEMBL | A0A4D8YZ52 | 6e-77 | A0A4D8YZ52_SALSN; EREBP-like factor | ||||
STRING | VIT_16s0100g00400.t01 | 2e-58 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA553 | 22 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 5e-39 | ERF family protein |
Publications ? help Back to Top | |||
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