PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00000713-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | B3 | ||||||||
Protein Properties | Length: 874aa MW: 95601.8 Da PI: 7.0186 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.1 | 3.7e-19 | 342 | 441 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+l+ sd+++ grlvlpk +ae++ +++ e++ ++++d +g++W++++++ +++s++yvl+ G + +L++gD+v+F++ SMil_00000713-RA_Salv 342 FEKTLSASDAGRIGRLVLPKACAEAYfpTINQSEGIPIRIQDIKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDTVIFSR 428 99**************************777788999***************9989999999***9.********************8 PP -SSSEE..EEEEE- CS B3 85 dgrsefelvvkvfr 98 ++ + +lv++ ++ SMil_00000713-RA_Salv 429 ID-PGSQLVIGCRK 441 87.44445666554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.6E-29 | 338 | 446 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.88E-20 | 339 | 441 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.22E-23 | 340 | 441 | No hit | No description |
SMART | SM01019 | 4.6E-20 | 342 | 442 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.2E-16 | 342 | 441 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.687 | 342 | 443 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 12.762 | 590 | 640 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 3.0E-11 | 597 | 637 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 874 aa Download sequence Send to blast |
LNLREMGSKN CMNEVCRATT SLDLKKGWSL KSGGFATLCY KCGSAYENSV FCETYHSDES 60 GWRECRICGK IVHCGCIASR HLFEYMEFGG VACISCAKRL EIQSPQPVQI PNDISSDRSA 120 NKTCTREAQP IVVEHRVDDE KFSTRKLLQL TRAIGVNSVP TAVELKKEES VLRSTESSKR 180 IQNHSQNCSS SVFVKPDYSR PKQGVKDMYE SLAHPSLKFS LTSPLGSSNS VLPILPGTPV 240 PGGPVPGGIV EGNEPTKGSL QHGQRARHIS PKPPKPSPVA GLEVSKAAAS QTRVPRPPAD 300 GRGRNQLLPR YWPRITDQEL QQLSGEICLN HPSLKSTIVP LFEKTLSASD AGRIGRLVLP 360 KACAEAYFPT INQSEGIPIR IQDIKGKEWT FQFRFWPNNN SRMYVLEGVT PCIQNMQLQA 420 GDTVIFSRID PGSQLVIGCR KAANNSDVQE PQPPAALNCD SPGEASFSGV NDTQTSNGGR 480 ASDDSQPPHM TISEKKKVRN IKNKRLHMHN EDATELRVTW EEAQELFRPS PSSEPTVVMV 540 EDYEFEEFEV NRDSASIIAL FATVFLVMCI LPVGEPPVFG KRTIFISRPS GEQEQLAQCD 600 SCSKWRRLPI NALLCAKWTC SDNIWDTNRA SCSAPEDLSP RDLESSSVNK ENKKRRISES 660 TASKEGEPSG LDALANAAVL GDNIGDMAEY SAGATTKHPR HRPGCSCIVC IQPPSGKGKH 720 EPTCKCNVCL TVRRRFKTLM MRKKKRQSER EAELAQEKDN KSSAKLELEK EDIAGLALLN 780 MNNPENETGN NGAHADLEET SKGGGLDLNC DPHREDEILV EASGMNLTTL MNSTAFPLDV 840 YAGQNGVVPS SGSCSAAREN AADGGGGEAD REDG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 1e-67 | 313 | 449 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 732 | 743 | RRRFKTLMMRKK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011080654.2 | 0.0 | LOW QUALITY PROTEIN: B3 domain-containing transcription repressor VAL1 | ||||
TrEMBL | A0A4D8YV42 | 0.0 | A0A4D8YV42_SALSN; Uncharacterized protein | ||||
STRING | Migut.D00818.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1491 | 23 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 0.0 | HSI2-like 1 |