PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00000713-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family B3
Protein Properties Length: 874aa    MW: 95601.8 Da    PI: 7.0186
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00000713-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.13.7e-19342441198
                            EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                            f+k+l+ sd+++ grlvlpk +ae++   +++ e++ ++++d +g++W++++++  +++s++yvl+ G     +  +L++gD+v+F++
  SMil_00000713-RA_Salv 342 FEKTLSASDAGRIGRLVLPKACAEAYfpTINQSEGIPIRIQDIKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDTVIFSR 428
                            99**************************777788999***************9989999999***9.********************8 PP

                            -SSSEE..EEEEE- CS
                     B3  85 dgrsefelvvkvfr 98 
                            ++  + +lv++ ++
  SMil_00000713-RA_Salv 429 ID-PGSQLVIGCRK 441
                            87.44445666554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.6E-29338446IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-20339441IPR015300DNA-binding pseudobarrel domain
CDDcd100171.22E-23340441No hitNo description
SMARTSM010194.6E-20342442IPR003340B3 DNA binding domain
PfamPF023623.2E-16342441IPR003340B3 DNA binding domain
PROSITE profilePS5086310.687342443IPR003340B3 DNA binding domain
PROSITE profilePS5105012.762590640IPR011124Zinc finger, CW-type
PfamPF074963.0E-11597637IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 874 aa     Download sequence    Send to blast
LNLREMGSKN CMNEVCRATT SLDLKKGWSL KSGGFATLCY KCGSAYENSV FCETYHSDES  60
GWRECRICGK IVHCGCIASR HLFEYMEFGG VACISCAKRL EIQSPQPVQI PNDISSDRSA  120
NKTCTREAQP IVVEHRVDDE KFSTRKLLQL TRAIGVNSVP TAVELKKEES VLRSTESSKR  180
IQNHSQNCSS SVFVKPDYSR PKQGVKDMYE SLAHPSLKFS LTSPLGSSNS VLPILPGTPV  240
PGGPVPGGIV EGNEPTKGSL QHGQRARHIS PKPPKPSPVA GLEVSKAAAS QTRVPRPPAD  300
GRGRNQLLPR YWPRITDQEL QQLSGEICLN HPSLKSTIVP LFEKTLSASD AGRIGRLVLP  360
KACAEAYFPT INQSEGIPIR IQDIKGKEWT FQFRFWPNNN SRMYVLEGVT PCIQNMQLQA  420
GDTVIFSRID PGSQLVIGCR KAANNSDVQE PQPPAALNCD SPGEASFSGV NDTQTSNGGR  480
ASDDSQPPHM TISEKKKVRN IKNKRLHMHN EDATELRVTW EEAQELFRPS PSSEPTVVMV  540
EDYEFEEFEV NRDSASIIAL FATVFLVMCI LPVGEPPVFG KRTIFISRPS GEQEQLAQCD  600
SCSKWRRLPI NALLCAKWTC SDNIWDTNRA SCSAPEDLSP RDLESSSVNK ENKKRRISES  660
TASKEGEPSG LDALANAAVL GDNIGDMAEY SAGATTKHPR HRPGCSCIVC IQPPSGKGKH  720
EPTCKCNVCL TVRRRFKTLM MRKKKRQSER EAELAQEKDN KSSAKLELEK EDIAGLALLN  780
MNNPENETGN NGAHADLEET SKGGGLDLNC DPHREDEILV EASGMNLTTL MNSTAFPLDV  840
YAGQNGVVPS SGSCSAAREN AADGGGGEAD REDG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-673134492131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1732743RRRFKTLMMRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080654.20.0LOW QUALITY PROTEIN: B3 domain-containing transcription repressor VAL1
TrEMBLA0A4D8YV420.0A0A4D8YV42_SALSN; Uncharacterized protein
STRINGMigut.D00818.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14912365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1