PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00000711-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 311aa    MW: 34765.9 Da    PI: 8.6085
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00000711-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.17.4e-12258304346
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqk 46 
                            rW+ +E+e l ++v+++G+g Wk+I        +gRt+ ++k++w++
  SMil_00000711-RA_Salv 258 RWSLQEEEALRNGVTRFGKGYWKLILDNNRdvfEGRTEVDLKDKWRN 304
                            9*********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.9E-13250307IPR009057Homeodomain-like
PROSITE profilePS5129412.36251310IPR017930Myb domain
SMARTSM007171.3E-5255308IPR001005SANT/Myb domain
SuperFamilySSF466891.87E-13257307IPR009057Homeodomain-like
CDDcd116609.36E-16257307No hitNo description
PfamPF002497.5E-8258304IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEKFAEKGGL GSELLSAWKD EFDAAVWDDM SRECFKKEFW DLMGSGVAEE ETPSSRVDGA  60
ANGSDASKVR HKGKIKLRDK LVGVRRLKTA SANSRGAKIV DSDETTAEPS GGRNSLPQSV  120
EVNKAREALN SSSAELRAAV KDPLPEALRV AEAICNETRQ DKRQDPAESN KGEPKLFVVD  180
VCGVVQSCGV NVNNVPRPSL MERNKSAHTY EWDDSIDASP EDIAFRPGIQ LPSPKTINTS  240
PLKIYQTNNV KKRRRGRRWS LQEEEALRNG VTRFGKGYWK LILDNNRDVF EGRTEVDLKD  300
KWRNMSRSEN L
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090069.12e-78telomere repeat-binding protein 2-like
TrEMBLA0A2G9GRI01e-104A0A2G9GRI0_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37742439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.23e-13MYB_related family protein