PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00000667-RA_Salv | ||||||||
Common Name | WRKY30 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 478aa MW: 51928.4 Da PI: 6.6788 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.7 | 3.2e-30 | 248 | 306 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+H h+ SMil_00000667-RA_Salv 248 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILITTYEGNHSHP 306 7*********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.6E-33 | 232 | 308 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-27 | 240 | 308 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.103 | 242 | 308 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.7E-36 | 247 | 307 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.1E-26 | 249 | 306 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 478 aa Download sequence Send to blast |
MEKGWGLALE NSDRVGFFGS KSVFEYSQSP RLNNRSTMFP AAPPPAGEHA VVLGEVDFFS 60 AKKRPVDEVK KEINETRDLN IGLQLVTASD RSKVDDVSSD AEDRRAKIEM GQIEVELERM 120 KAENQRLKGM VTHISNNYTT LQMQLHRLMQ HQQNEIVERK SEEKEENGVV LVPRQFLELN 180 KQISDEQSGS SSEERMVSGN KRINERDESE GSAPNKSPKP APPEPLPDAT MRKARVSVRA 240 RSEAPMISDG CQWRKYGQKM AKGNPCPRAY YRCTMAVGCP VRKQVQRCAE DRTILITTYE 300 GNHSHPLPPA AMSMASTTSS AASMLLAGSM PSGDGGGLMN PSFLTRAMLP CSSNMATISA 360 SAPFPTITLD LTHSPSPHFQ LPLAPATPPS FHQVLGQVVQ NQSKFSGLQM SQDMSQLRPS 420 YADTLSAATA AITSDPTFTA ALAAAISSIL GGAQPNNDGA AAANHNNADV NTIDDNAQ |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-22 | 234 | 310 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KM823153 | 0.0 | KM823153.1 Salvia miltiorrhiza WRKY protein (WRKY30) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011096037.1 | 0.0 | WRKY transcription factor 6 | ||||
Swissprot | Q9C519 | 1e-124 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A0D5YA08 | 0.0 | A0A0D5YA08_SALMI; WRKY protein | ||||
STRING | Migut.M01342.1.p | 1e-170 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA945 | 24 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G62300.1 | 3e-97 | WRKY family protein |