PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00000579-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 253aa    MW: 26931.6 Da    PI: 6.5148
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00000579-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.57.7e-1990139255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             y+GVr +  +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  SMil_00000579-RA_Salv  90 TYRGVRKRN-WGKWVCEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKG 139
                            69****887.**********843...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-3290148IPR001471AP2/ERF domain
SMARTSM003801.2E-3490153IPR001471AP2/ERF domain
PfamPF008479.1E-1490139IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-2290148IPR016177DNA-binding domain
PROSITE profilePS5103223.70990147IPR001471AP2/ERF domain
PRINTSPR003671.2E-1091102IPR001471AP2/ERF domain
CDDcd000181.09E-3091149No hitNo description
PRINTSPR003671.2E-10113129IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MEHKIIFENI VEDQLFSTST STSSSTSTTT AAAATSTSSS SSNETQSAAT TCDKSNIEAK  60
SQGEKSGNEV SKRRKAAASG GGGGGDRHPT YRGVRKRNWG KWVCEIREPR KKSRIWLGTY  120
PTAEMAARAH DVAALAIKGQ SAYLNFPHLA QVLPRPASTA PKDIQAAAAK AAAATFPGEA  180
EPSRSQLVSS HSSTDLAADS MQESADDTFF DLPDLSLSTT TDHGSGYCYY VSSWPMAGAD  240
AGFRLEDPIL WEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-2179148373Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089857.11e-100ethylene-responsive transcription factor ERF034
SwissprotQ8LBQ75e-63ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A4D8ZXM92e-99A0A4D8ZXM9_SALSN; EREBP-like factor
STRINGXP_009613551.11e-73(Nicotiana tomentosiformis)
STRINGMigut.B01558.1.p8e-74(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.14e-58ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]