PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00000430-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family GRAS
Protein Properties Length: 665aa    MW: 71197.3 Da    PI: 6.0361
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00000430-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS285.12e-8737466474374
                   GRAS  74 sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleet 161
                             + ++ a+k fse+sP+++f+++t+NqaIle ++g +r+Hi+Dfdi++G+QW++L+q+La R +g+ps++iT+++s +++++ el  t
  SMil_00000430-RA_Salv 374 LVFKIGAYKSFSEISPLVQFANFTCNQAILEVLQGFDRIHIVDFDIGYGGQWASLMQELALRGGGAPSFKITALASTSTHDQLELGLT 461
                            778999************************************************************************99******** PP

                   GRAS 162 gerLakfAeelgvpfefnvlvakrledleleeL..rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247
                            +e+L +fA+e+++ fef+++  ++l++ + ++L  +v+++Ea+aVnl +   +l +++ s++     ++++vk+lsP++vv v++ +d
  SMil_00000430-RA_Salv 462 RENLIQFATEINIAFEFEAISIDSLNSAS-WSLpfHVQENEAIAVNLPVG--SLANHQFSVPL----IMRFVKQLSPRIVVSVDRGCD 542
                            *******************9888888875.555449999********994..45544555555....99******************* PP

                   GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335
                            +++ +F++++++al+ ys l++sl+a    + ++ +k+Er+ll++ i+++v+ + ++     e+ ++Wr+ + ++GF+p+++s+++++
  SMil_00000430-RA_Salv 543 RTDLPFANHIVHALQSYSNLLESLDAV-NVNMDALQKIERFLLQPGIEKIVMGRLRS----PEKTQHWRALFLSSGFSPITFSNFTES 625
                            ************************665.4577999*****************99998....9************************** PP

                   GRAS 336 qaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                            qa++++++++++g++ve+++ slvl+W++++L+s++aWr
  SMil_00000430-RA_Salv 626 QAECVIKRTPVRGFQVEKRQSSLVLCWQRKELISATAWR 664
                            **************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.607272644IPR005202Transcription factor GRAS
PfamPF035146.8E-85374664IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MKGMPLPFEF EGKGVLDLDF VVKNRDFITD FVRKGCFLSS SFGEPTSVLD SARIPSRPTS  60
SSTLSSSLGG STGGGGAAST DTAGVAAVSD TNPSPKWQQD STTATSSNAG GGADLLPVLP  120
SLDGGGNPEK FAMEDWESVL SESAAVSPSQ EQAFIRWVMG DVEDPAMANL NKALQIGSAA  180
EFDFSGGFGV VDQGFGGDQF GGSFMPTLPN FSRSSAEKIG LPCLLFRYSI SPNSMHPSNN  240
LGAIALHHPT AFDSSAEMKP PIFNQQLLLN HQPQHASFSP AAIDAAARAG PPSGEAPQPR  300
RGADLERASA APPLPEANGI RAEAQNGGIR AAAAAAAGHS RPAIQGCRAC PDRKSSTRAR  360
DIGAAQSPAL SHCLVFKIGA YKSFSEISPL VQFANFTCNQ AILEVLQGFD RIHIVDFDIG  420
YGGQWASLMQ ELALRGGGAP SFKITALAST STHDQLELGL TRENLIQFAT EINIAFEFEA  480
ISIDSLNSAS WSLPFHVQEN EAIAVNLPVG SLANHQFSVP LIMRFVKQLS PRIVVSVDRG  540
CDRTDLPFAN HIVHALQSYS NLLESLDAVN VNMDALQKIE RFLLQPGIEK IVMGRLRSPE  600
KTQHWRALFL SSGFSPITFS NFTESQAECV IKRTPVRGFQ VEKRQSSLVL CWQRKELISA  660
TAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-3038166480375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0145813e-32BT014581.1 Lycopersicon esculentum clone 134038R, mRNA sequence.
GenBankHG9754403e-32HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755133e-32HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023733548.10.0scarecrow-like protein 6
TrEMBLA0A4D8ZRK60.0A0A4D8ZRK6_SALSN; Uncharacterized protein
STRINGXP_009762628.11e-172(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62532235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-125GRAS family protein