PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00000347-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | LBD | ||||||||
Protein Properties | Length: 161aa MW: 17867.6 Da PI: 5.8977 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.4 | 2.2e-42 | 20 | 120 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +CaaCk+lrr+C ++Cvlapyfp ++p kf +h++FGasn++k+l+++pe +reda+ss+vyeA+ar+rdPvyG++g i +lq+q++ SMil_00000347-RA_Salv 20 PCAACKILRRRCIEKCVLAPYFPPHDPLKFTTAHRVFGASNIIKFLQEVPEAQREDAVSSMVYEANARLRDPVYGCAGAICHLQKQVA 107 7*************************************************************************************** PP DUF260 89 qlkaelallkeel 101 l+++la++++++ SMil_00000347-RA_Salv 108 DLQEQLAKAQAQI 120 *********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.02 | 19 | 120 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.9E-43 | 20 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MEGSDSTSSQ SPSPSVVMSP CAACKILRRR CIEKCVLAPY FPPHDPLKFT TAHRVFGASN 60 IIKFLQEVPE AQREDAVSSM VYEANARLRD PVYGCAGAIC HLQKQVADLQ EQLAKAQAQI 120 VNMQCHHSNL MALICMDMDM DDFSCSPHTD TNNLLDPLWI I |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-43 | 11 | 125 | 2 | 116 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-43 | 11 | 125 | 2 | 116 | LOB family transfactor Ramosa2.1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003597159.1 | 4e-78 | LOB domain-containing protein 1 | ||||
Refseq | XP_017246117.1 | 6e-78 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 4e-67 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A2G9GMD1 | 4e-78 | A0A2G9GMD1_9LAMI; Uncharacterized protein | ||||
STRING | AES67410 | 1e-77 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 4e-65 | LOB domain-containing protein 1 |