PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00000210-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | ERF | ||||||||
Protein Properties | Length: 311aa MW: 33626.9 Da PI: 7.6044 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.5 | 1.1e-20 | 138 | 187 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f tae+Aa+a+++a+++++g SMil_00000210-RA_Salv 138 RYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFNTAEDAARAYDEAALRFRG 187 7********.**********93....36************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 8.5E-23 | 138 | 196 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 9.1E-38 | 138 | 201 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-14 | 138 | 187 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.475 | 138 | 195 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-33 | 138 | 196 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.5E-12 | 139 | 150 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.89E-28 | 146 | 197 | No hit | No description |
PRINTS | PR00367 | 8.5E-12 | 161 | 177 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MSYFHMQQPQ QSDYLLSAVV AAPPSEMSAM VTALTHVVSS QPQNGGGISS SCGGGGGRDF 60 VQASINSPSA YSSSSSASAS GRKRRHDRED CAAEFSENFY SFRAAKSEPA AAAAEQTPPP 120 ESSSSTASYP ETGERRRRYR GVRQRPWGKW AAEIRDPQKA ARVWLGTFNT AEDAARAYDE 180 AALRFRGSRA KLNFPENVRI LPPPQPSQYS TQFTISAPPP PPTAAAPQQS FFQTAGSDYL 240 EYSELLGSRG DLQLGHPPAT LFENMLYASS LAGLYSHYSS SISSYQEEGV SGSRSFPAPP 300 WNSGFYPPSY S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-24 | 137 | 198 | 4 | 66 | ATERF1 |
3gcc_A | 1e-24 | 137 | 198 | 4 | 66 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 138 | ERRRRY |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011101230.1 | 8e-81 | ethylene-responsive transcription factor ABR1-like | ||||
TrEMBL | A0A4D8ZF01 | 5e-82 | A0A4D8ZF01_SALSN; EREBP-like factor | ||||
STRING | PGSC0003DMT400016306 | 8e-49 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4322 | 21 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 5e-20 | ethylene response factor 110 |