PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00000210-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 311aa    MW: 33626.9 Da    PI: 7.6044
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00000210-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.51.1e-20138187255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            +y+GVr+++ +g+W+AeIrdp     + +r++lg+f tae+Aa+a+++a+++++g
  SMil_00000210-RA_Salv 138 RYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFNTAEDAARAYDEAALRFRG 187
                            7********.**********93....36************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-23138196IPR016177DNA-binding domain
SMARTSM003809.1E-38138201IPR001471AP2/ERF domain
PfamPF008472.4E-14138187IPR001471AP2/ERF domain
PROSITE profilePS5103225.475138195IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-33138196IPR001471AP2/ERF domain
PRINTSPR003678.5E-12139150IPR001471AP2/ERF domain
CDDcd000186.89E-28146197No hitNo description
PRINTSPR003678.5E-12161177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MSYFHMQQPQ QSDYLLSAVV AAPPSEMSAM VTALTHVVSS QPQNGGGISS SCGGGGGRDF  60
VQASINSPSA YSSSSSASAS GRKRRHDRED CAAEFSENFY SFRAAKSEPA AAAAEQTPPP  120
ESSSSTASYP ETGERRRRYR GVRQRPWGKW AAEIRDPQKA ARVWLGTFNT AEDAARAYDE  180
AALRFRGSRA KLNFPENVRI LPPPQPSQYS TQFTISAPPP PPTAAAPQQS FFQTAGSDYL  240
EYSELLGSRG DLQLGHPPAT LFENMLYASS LAGLYSHYSS SISSYQEEGV SGSRSFPAPP  300
WNSGFYPPSY S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-24137198466ATERF1
3gcc_A1e-24137198466ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133138ERRRRY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101230.18e-81ethylene-responsive transcription factor ABR1-like
TrEMBLA0A4D8ZF015e-82A0A4D8ZF01_SALSN; EREBP-like factor
STRINGPGSC0003DMT4000163068e-49(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43222140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.15e-20ethylene response factor 110