PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00000148-RA_Salv | ||||||||
Common Name | MYB89 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MYB | ||||||||
Protein Properties | Length: 224aa MW: 25421.7 Da PI: 7.592 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.8 | 8e-16 | 12 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W+++Ed l d+v+++G+ +W + +++ g++R++k+c++rw++yl SMil_00000148-RA_Salv 12 RGPWSPQEDSTLRDYVEKHGTAgSWISLPQKAGLKRCGKSCRLRWLNYL 60 89******************99*************************97 PP | |||||||
2 | Myb_DNA-binding | 41.5 | 3.1e-13 | 67 | 109 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T +Ed +++ + + G++ W+ Ia+ ++ gRt++++k++w++ SMil_00000148-RA_Salv 67 GGFTHQEDTIILALYHNIGSR-WSVIASQLP-GRTDNDVKNYWNT 109 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.092 | 7 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.54E-26 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-10 | 11 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.4E-15 | 12 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-23 | 13 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.51E-8 | 14 | 60 | No hit | No description |
SMART | SM00717 | 2.8E-11 | 65 | 113 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 15.299 | 65 | 115 | IPR017930 | Myb domain |
Pfam | PF00249 | 6.8E-12 | 67 | 109 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-23 | 68 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.73E-9 | 69 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
RAPCCDKSKV KRGPWSPQED STLRDYVEKH GTAGSWISLP QKAGLKRCGK SCRLRWLNYL 60 RPNIKHGGFT HQEDTIILAL YHNIGSRWSV IASQLPGRTD NDVKNYWNTK LKKKLATNHL 120 AAAAATINSN MLPYFPFDAN SYQHSQIPLP ALVEAPENAL LPSAPATLSP PFINADGSCE 180 EDAFLLDFMP NYDLLDAFDF HDKFNHQIDY HLQQEQPIYQ SFTY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-25 | 12 | 117 | 7 | 110 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF059443 | 0.0 | KF059443.1 Salvia miltiorrhiza MYB-related transcription factor (MYB89) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011078220.1 | 1e-84 | transcription factor RAX2 | ||||
Swissprot | Q9FKL2 | 9e-68 | MYB36_ARATH; Transcription factor MYB36 | ||||
TrEMBL | A0A059PRF5 | 1e-168 | A0A059PRF5_SALMI; MYB-related transcription factor | ||||
STRING | XP_009799606.1 | 1e-73 | (Nicotiana sylvestris) | ||||
STRING | GSMUA_Achr1P04910_001 | 4e-74 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 7e-64 | myb domain protein 36 |
Publications ? help Back to Top | |||
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