PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00000117-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 525aa    MW: 59073 Da    PI: 9.5887
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00000117-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.42.9e-07181223346
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            +WT+eE ++l d+++++  + +  Ia +++  +t +++k+r+++
  SMil_00000117-RA_Salv 181 AWTKEETDQLFDLCERFDLR-FVVIADRFPSSKTVEELKDRYYS 223
                            6*******************.*********999*********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF162829.0E-31154228IPR032563DAMP1, SANT/Myb-like domain
Gene3DG3DSA:1.10.10.601.2E-5176225IPR009057Homeodomain-like
SuperFamilySSF466893.12E-6177228IPR009057Homeodomain-like
SMARTSM007171.1E-8178227IPR001005SANT/Myb domain
CDDcd116583.46E-18182224No hitNo description
PfamPF054991.9E-6389455IPR008468DNA methyltransferase 1-associated 1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0000812Cellular ComponentSwr1 complex
GO:0035267Cellular ComponentNuA4 histone acetyltransferase complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
LDLESPFVAQ FIHSYTTTPR ISIINNLIAG GIHFVVRISY HFCWGERTVV LQMDAKDILG  60
LPKNAPSMQE KKSKPPKESQ RKPDGISREV YALTGGLAPL MPAIDVNHLK RKVQSENEKI  120
TWQWLPFSNS ARKDNLQLYH WVRVVNSVPP TGDYSFAKYN KSVDVIKYTD EEYEKHLTDH  180
AWTKEETDQL FDLCERFDLR FVVIADRFPS SKTVEELKDR YYSVSRAILT ARAPSPGDVS  240
GHPLVKGECP IFNFDQKYDS FSSPFERCPM MKEPYNASQD TDRKRALNLL LSHTKQQERK  300
DVEVVAHAKR ITEARKAIKA SQEPPVPTLS ESGLVNADKA GMTADTAAPS TNSQFPSTNP  360
VSETAAAVAS LRMLRVYLRT YALDQMVQAV SSSAGLRTIK RVEQTLQDLG VNLKPKVPTK  420
AVCSEHLELR KEILTLLNLQ KQLQYKEAEG PSFRDGSYTE TPGTPPKQSQ RAADLDRTFT  480
PESLQIGGER FVKKEQKRKG PGRSSDAPSS PAQSKRPRKY NASDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3hm5_A4e-21153237491DNA methyltransferase 1-associated protein 1
4iej_A4e-21153237491DNA methyltransferase 1-associated protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1491497VKKEQKR
Functional Description ? help Back to Top
Source Description
UniProtComponent of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012834460.10.0PREDICTED: SWR1-complex protein 4 isoform X2
SwissprotQ8VZL60.0SWC4_ARATH; SWR1-complex protein 4
TrEMBLA0A2G9HDE90.0A0A2G9HDE9_9LAMI; DNA methyltransferase 1-associated protein-1
STRINGMigut.D00054.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76261515
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47210.10.0MYB_related family protein
Publications ? help Back to Top
  1. Gómez-Zambrano Á, et al.
    Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes.
    Mol Plant, 2018. 11(6): p. 815-832
    [PMID:29604400]