PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00000117-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MYB_related | ||||||||
Protein Properties | Length: 525aa MW: 59073 Da PI: 9.5887 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.4 | 2.9e-07 | 181 | 223 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE ++l d+++++ + + Ia +++ +t +++k+r+++ SMil_00000117-RA_Salv 181 AWTKEETDQLFDLCERFDLR-FVVIADRFPSSKTVEELKDRYYS 223 6*******************.*********999*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF16282 | 9.0E-31 | 154 | 228 | IPR032563 | DAMP1, SANT/Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-5 | 176 | 225 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.12E-6 | 177 | 228 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-8 | 178 | 227 | IPR001005 | SANT/Myb domain |
CDD | cd11658 | 3.46E-18 | 182 | 224 | No hit | No description |
Pfam | PF05499 | 1.9E-6 | 389 | 455 | IPR008468 | DNA methyltransferase 1-associated 1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0000812 | Cellular Component | Swr1 complex | ||||
GO:0035267 | Cellular Component | NuA4 histone acetyltransferase complex | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 525 aa Download sequence Send to blast |
LDLESPFVAQ FIHSYTTTPR ISIINNLIAG GIHFVVRISY HFCWGERTVV LQMDAKDILG 60 LPKNAPSMQE KKSKPPKESQ RKPDGISREV YALTGGLAPL MPAIDVNHLK RKVQSENEKI 120 TWQWLPFSNS ARKDNLQLYH WVRVVNSVPP TGDYSFAKYN KSVDVIKYTD EEYEKHLTDH 180 AWTKEETDQL FDLCERFDLR FVVIADRFPS SKTVEELKDR YYSVSRAILT ARAPSPGDVS 240 GHPLVKGECP IFNFDQKYDS FSSPFERCPM MKEPYNASQD TDRKRALNLL LSHTKQQERK 300 DVEVVAHAKR ITEARKAIKA SQEPPVPTLS ESGLVNADKA GMTADTAAPS TNSQFPSTNP 360 VSETAAAVAS LRMLRVYLRT YALDQMVQAV SSSAGLRTIK RVEQTLQDLG VNLKPKVPTK 420 AVCSEHLELR KEILTLLNLQ KQLQYKEAEG PSFRDGSYTE TPGTPPKQSQ RAADLDRTFT 480 PESLQIGGER FVKKEQKRKG PGRSSDAPSS PAQSKRPRKY NASDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3hm5_A | 4e-21 | 153 | 237 | 4 | 91 | DNA methyltransferase 1-associated protein 1 |
4iej_A | 4e-21 | 153 | 237 | 4 | 91 | DNA methyltransferase 1-associated protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 491 | 497 | VKKEQKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012834460.1 | 0.0 | PREDICTED: SWR1-complex protein 4 isoform X2 | ||||
Swissprot | Q8VZL6 | 0.0 | SWC4_ARATH; SWR1-complex protein 4 | ||||
TrEMBL | A0A2G9HDE9 | 0.0 | A0A2G9HDE9_9LAMI; DNA methyltransferase 1-associated protein-1 | ||||
STRING | Migut.D00054.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7626 | 15 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47210.1 | 0.0 | MYB_related family protein |
Publications ? help Back to Top | |||
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