PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00000011-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Dof

Protein Properties

Length: 224aa MW: 24689.6 Da PI: 6.0118

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00000011-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.2	7.3e-38	42	99	5	62
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 a +cprC s+ntkfCyynnys+sqPryfCkaCrryWtkGG+lrnvPvGgg+rk ++ss SMil_00000011-RA_Salv 42 APSCPRCLSSNTKFCYYNNYSVSQPRYFCKACRRYWTKGGSLRNVPVGGGCRKTRRSS 99 668***************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-23	40	94	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.7E-32	43	97	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.518	43	97	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	45	81	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MSSSSNNHPF LDHQFPKIKP SLLMMGSCKT LKWKPYSAIE AAPSCPRCLS SNTKFCYYNN 60 YSVSQPRYFC KACRRYWTKG GSLRNVPVGG GCRKTRRSSR ALSRRPPPSE SLANAAAPPK 120 HDDYEGSNFA AAEMFECGGD VGVINGGQVH GSFDGGDFVC ENFGVFEVEG IGIESEMFPN 180 LEGFGCGQPP LMEMQEFEVF SSGDDHSLMT DNWGSFDLSA YENF

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK376388	1e-50	AK376388.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3122H18.
GenBank	AM084360	1e-50	AM084360.1 Hordeum vulgare subsp. vulgare dof12 gene for dof zinc finger protein 12, exons 1-2.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21340.1	1e-33	Dof family protein