PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_30792.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 134aa    MW: 15380.3 Da    PI: 10.6814
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_30792.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.72.8e-1547127487
                              E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                       B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 
                               +++ ++++++ +++p +f++++g+     ++++l d + rsW+v +   +++++ + +++GW +F kan+++ gD+  F+l+++
  Sme2.5_30792.1_g00001.1  47 STIKRYTFTKAVFYFPMDFVKSNGLMR--RREMILVDGKQRSWSVCI--GRTGRHhFGIKRGWTQFRKANNVQGGDTYKFELTNN 127
                              5678999****************9984..458*************99..5555555999**********************9764 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.8E-1737132IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.37E-1740133IPR015300DNA-binding pseudobarrel domain
CDDcd100177.59E-1143134No hitNo description
PROSITE profilePS5086312.73144134IPR003340B3 DNA binding domain
SMARTSM010192.1E-744132IPR003340B3 DNA binding domain
PfamPF023627.5E-1446128IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MHDDFSSSFL GYFIAITDRR HKTSDVATLI SXAPASTSAD ANPYFISTIK RYTFTKAVFY  60
FPMDFVKSNG LMRRREMILV DGKQRSWSVC IGRTGRHHFG IKRGWTQFRK ANNVQGGDTY  120
KFELTNNGKI PILH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015084058.12e-56putative B3 domain-containing protein REM15
RefseqXP_015168739.18e-57PREDICTED: B3 domain-containing protein REM14-like
RefseqXP_015168742.11e-59PREDICTED: B3 domain-containing protein REM17-like
RefseqXP_025888305.15e-56putative B3 domain-containing protein REM15
TrEMBLA0A0V0I8252e-63A0A0V0I825_SOLCH; Putative ovule protein
STRINGSolyc08g006220.2.19e-59(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.14e-14B3 family protein