PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_30792.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | B3 | ||||||||
Protein Properties | Length: 134aa MW: 15380.3 Da PI: 10.6814 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.7 | 2.8e-15 | 47 | 127 | 4 | 87 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 +++ ++++++ +++p +f++++g+ ++++l d + rsW+v + +++++ + +++GW +F kan+++ gD+ F+l+++ Sme2.5_30792.1_g00001.1 47 STIKRYTFTKAVFYFPMDFVKSNGLMR--RREMILVDGKQRSWSVCI--GRTGRHhFGIKRGWTQFRKANNVQGGDTYKFELTNN 127 5678999****************9984..458*************99..5555555999**********************9764 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.8E-17 | 37 | 132 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.37E-17 | 40 | 133 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.59E-11 | 43 | 134 | No hit | No description |
PROSITE profile | PS50863 | 12.731 | 44 | 134 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.1E-7 | 44 | 132 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.5E-14 | 46 | 128 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MHDDFSSSFL GYFIAITDRR HKTSDVATLI SXAPASTSAD ANPYFISTIK RYTFTKAVFY 60 FPMDFVKSNG LMRRREMILV DGKQRSWSVC IGRTGRHHFG IKRGWTQFRK ANNVQGGDTY 120 KFELTNNGKI PILH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015084058.1 | 2e-56 | putative B3 domain-containing protein REM15 | ||||
Refseq | XP_015168739.1 | 8e-57 | PREDICTED: B3 domain-containing protein REM14-like | ||||
Refseq | XP_015168742.1 | 1e-59 | PREDICTED: B3 domain-containing protein REM17-like | ||||
Refseq | XP_025888305.1 | 5e-56 | putative B3 domain-containing protein REM15 | ||||
TrEMBL | A0A0V0I825 | 2e-63 | A0A0V0I825_SOLCH; Putative ovule protein | ||||
STRING | Solyc08g006220.2.1 | 9e-59 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24700.1 | 4e-14 | B3 family protein |