PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_30503.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | B3 | ||||||||
Protein Properties | Length: 166aa MW: 18631.2 Da PI: 8.7667 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.8 | 7.1e-17 | 2 | 79 | 18 | 98 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +p +fa+eh +++++++ l +++g++W+v+ i ++ + ++++ +GW +Fv++n+++ gD+++F+l+++ e l+v+v+r Sme2.5_30503.1_g00001.1 2 IPYQFATEHL--PNCKVKILLHNLKGKTWTVNSIPtTRVQTSHTFCGGWLSFVRDNNIDLGDICIFELVRKCE--LRVRVLR 79 9********6..45999****************77566666699***********************998544..5888877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.16E-19 | 1 | 79 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.93 | 1 | 81 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.3E-19 | 1 | 79 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.5E-7 | 2 | 81 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.4E-14 | 2 | 79 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.28E-15 | 2 | 79 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
HIPYQFATEH LPNCKVKILL HNLKGKTWTV NSIPTTRVQT SHTFCGGWLS FVRDNNIDLG 60 DICIFELVRK CELRVRVLRV EKEGNDCSSK VVHEGLVTDY AKNSGCKSWI VGANSNHCLQ 120 RVAKAMTYDK QGSAPDKERH GNMLKNHLLH CQSKISSGDS GNLNDN |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975514 | 1e-154 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006354943.1 | 9e-96 | PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1 | ||||
Refseq | XP_006354944.1 | 9e-96 | PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1 | ||||
TrEMBL | A0A0V0IN53 | 3e-94 | A0A0V0IN53_SOLCH; Putative B3 domain-containing protein-like | ||||
STRING | Solyc04g079590.2.1 | 2e-88 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9820 | 21 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18000.1 | 7e-10 | VERDANDI |