PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_26542.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | E2F/DP | ||||||||
Protein Properties | Length: 171aa MW: 18474.9 Da PI: 8.9195 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 29.3 | 1.5e-09 | 120 | 156 | 1 | 40 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvk 40 r+++sL+llt+kf++l++++e+g+++ln++a++L +vk Sme2.5_26542.1_g00001.1 120 RYDSSLGLLTKKFINLIKHAEDGMLDLNKAADTL---EVK 156 6899******************************...443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.4E-9 | 118 | 156 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 0.005 | 120 | 162 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 5.0E-6 | 122 | 154 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
ALVRSSFALA VCLSNEADYW LLSDADVSIT DMWSHERGVH NCLFQPLKRK SAAANYGQGI 60 ADRNPVSGYA NVNSPMQTPI SGNDAQKVPR TSKARSASQA VTSNVGSPSG NNVTPVGPCR 120 YDSSLGLLTK KFINLIKHAE DGMLDLNKAA DTLEVKCINL VKHAELRRPY S |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT012840 | 1e-141 | BT012840.1 Lycopersicon esculentum clone 113908F, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006362858.1 | 5e-67 | PREDICTED: transcription factor E2FB | ||||
TrEMBL | M1BQE9 | 1e-65 | M1BQE9_SOLTU; Uncharacterized protein | ||||
TrEMBL | M1BQF0 | 6e-67 | M1BQF0_SOLTU; Uncharacterized protein | ||||
TrEMBL | M1BQF2 | 1e-65 | M1BQF2_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400050512 | 2e-66 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1077 | 24 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22220.3 | 1e-26 | E2F transcription factor 1 |