PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_25511.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

GRAS

Protein Properties

Length: 279aa MW: 30946.3 Da PI: 6.4167

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_25511.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	200.9	7.9e-62	50	276	1	234
GRAS 1 lvelLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 lv+ L++cAea+++++l+la+al++ ++ +s+ g +m++ a+yf+eAL +++++ p +++ns ++l k+f+ Sme2.5_25511.1_g00001.1 50 LVNILTACAEAIQENNLSLADALISDIRGFtVSQIGVAMKKEATYFAEALYHKIHG-----T--NPQDIVESSNSMDQLL-SKIFY 127 5789**********************99789999****************.....2..2222222234555554.489 PP GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfA 169 e + ilkf h+taNq Ilea++ ++rvH+iDf+++qG QW a+lqaLa Rp+gpp++R+Tg+g + + s++ l+e+g++La++A Sme2.5_25511.1_g00001.1 128 ENCLILKFPHVTANQSILEAFADSKRVHVIDFSLNQGSQWSAFLQALALRPGGPPTFRLTGIGGHYRTdeSTDGLQEVGSKLAQLA 213 ************************************************************986665789*********** PP GRAS 170 eelgvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvksl 234 +++gv+fef+ lv+++l+dle +L++++ E++aVn+v++l l+ ++++e+ vL+l+k++ Sme2.5_25511.1_g00001.1 214 QSVGVEFEFHGLVVHTLADLEAPMLNIRTsnVESVAVNSVFNLRCLFCIPGAIEK----VLDLIKQI 276 *********************9998889***********966666666....9999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	37.017	24	279	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.7E-59	50	276	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
SFNNEKKIDD QQEIRIFNVD FRALCHKTQK SCSRSELHNN LVNKETSVRL VNILTACAEA 60 IQENNLSLAD ALISDIRGFT VSQIGVAMKK EATYFAEALY HKIHGTNPQD IVESSNSMDQ 120 LLSKIFYENC LILKFPHVTA NQSILEAFAD SKRVHVIDFS LNQGSQWSAF LQALALRPGG 180 PPTFRLTGIG GHYRTDESTD GLQEVGSKLA QLAQSVGVEF EFHGLVVHTL ADLEAPMLNI 240 RTSNVESVAV NSVFNLRCLF CIPGAIEKVL DLIKQIGRL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-28	57	276	26	241	Protein SCARECROW
5b3h_A	4e-28	57	276	25	240	Protein SCARECROW
5b3h_D	4e-28	57	276	25	240	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269\|PubMed:15347801}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004249633.3	1e-143	DELLA protein GAI
Swissprot	Q7Y1B6	6e-85	GAI_SOLLC; DELLA protein GAI
TrEMBL	A0A3Q7IN05	1e-136	A0A3Q7IN05_SOLLC; Uncharacterized protein
STRING	Solyc10g086380.1.1	1e-143	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12864	11	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	3e-83	GRAS family protein

Publications ? help Back to Top
Nir I, et al. The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure. Plant Cell, 2017. 29(12): p. 3186-3197 [PMID:29150547]