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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Sme2.5_25329.1_g00001.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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| Family | B3 | ||||||||
| Protein Properties | Length: 129aa MW: 14934.4 Da PI: 5.1322 | ||||||||
| Description | B3 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 33.5 | 7.3e-11 | 1 | 52 | 36 | 88 |
EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88
++l+de+ r W v l + ++ ++ +t+GW +F +an++++gD+ ++l+++ +
Sme2.5_25329.1_g00001.1 1 MILRDEKQRPWAVGL--EPTGTHIAITRGWPQFREANDVQVGDTYKLELIDNgT 52
579************..*******************************998644 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| CDD | cd10017 | 4.09E-8 | 1 | 60 | No hit | No description |
| PROSITE profile | PS50863 | 11.674 | 1 | 61 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 1.9E-9 | 1 | 54 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 1.96E-9 | 1 | 54 | IPR015300 | DNA-binding pseudobarrel domain |
| Pfam | PF02362 | 5.7E-9 | 1 | 57 | IPR003340 | B3 DNA binding domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 129 aa Download sequence Send to blast |
MILRDEKQRP WAVGLEPTGT HIAITRGWPQ FREANDVQVG DTYKLELIDN GTIPELYFHC 60 EYMFARLLPF LFITFLQLRH VSFSPFLPLK LLESGKSCGA INKFIYYTDG IILFCYILQD 120 ASEILENVV |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_025888304.1 | 4e-26 | B3 domain-containing protein REM17-like | ||||
| TrEMBL | A0A3Q7HH58 | 8e-25 | A0A3Q7HH58_SOLLC; Uncharacterized protein | ||||
| STRING | Solyc08g006190.1.1 | 2e-25 | (Solanum lycopersicum) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA322 | 15 | 171 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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