PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_24399.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | Whirly | ||||||||
Protein Properties | Length: 188aa MW: 20773.5 Da PI: 8.9888 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 218.6 | 5.8e-68 | 11 | 149 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsn 86 s+yk+kaal+v+++ p+f+ ldsg++kl+r+G ++l++a+a+++r+ydW++kq+f+ls+te++++++l++k+sceffhdp ++ s+ Sme2.5_24399.1_g00001.1 11 SIYKGKAALTVEPRSPEFSPLDSGAFKLSRDGMVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSIISLGAKDSCEFFHDPNKGRSD 96 7************************************************************************************* PP Whirly 87 eGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 eG+vrk+lkvePlpdGsG+f+nlsv+n+l++ +e++++Pv+kaefavl s+++ Sme2.5_24399.1_g00001.1 97 EGRVRKVLKVEPLPDGSGHFFNLSVQNKLINLDENIYIPVTKAEFAVLVSAFN 149 *************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 4.1E-79 | 2 | 171 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 6.83E-82 | 4 | 188 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 7.0E-63 | 12 | 146 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
ASTPKVFVGY SIYKGKAALT VEPRSPEFSP LDSGAFKLSR DGMVMLQFAP AAGVRQYDWS 60 RKQVFSLSVT EIGSIISLGA KDSCEFFHDP NKGRSDEGRV RKVLKVEPLP DGSGHFFNLS 120 VQNKLINLDE NIYIPVTKAE FAVLVSAFNF VVPYLLGWHT AANSFKPEDA SRSNNANPRS 180 GAELEWNR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1l3a_A | 1e-135 | 1 | 187 | 33 | 219 | p24: plant transcriptional regulator PBF-2 |
1l3a_B | 1e-135 | 1 | 187 | 33 | 219 | p24: plant transcriptional regulator PBF-2 |
1l3a_C | 1e-135 | 1 | 187 | 33 | 219 | p24: plant transcriptional regulator PBF-2 |
1l3a_D | 1e-135 | 1 | 187 | 33 | 219 | p24: plant transcriptional regulator PBF-2 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269|PubMed:10948264, ECO:0000269|PubMed:12080340, ECO:0000269|PubMed:14960277}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF233342 | 0.0 | AF233342.1 Solanum tuberosum DNA-binding protein p24 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016548546.1 | 1e-136 | PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic | ||||
Swissprot | Q9LL85 | 1e-137 | WHY1_SOLTU; Single-stranded DNA-binding protein WHY1, chloroplastic | ||||
TrEMBL | A0A1U8EQ77 | 1e-135 | A0A1U8EQ77_CAPAN; Single-stranded DNA-binding protein WHY1, chloroplastic | ||||
TrEMBL | A0A2G2YDT6 | 1e-135 | A0A2G2YDT6_CAPAN; single-stranded DNA-binding protein WHY1, chloroplastic | ||||
STRING | PGSC0003DMT400045439 | 1e-135 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7731 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14410.1 | 1e-110 | ssDNA-binding transcriptional regulator |