PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sme2.5_24183.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 369aa MW: 40762.7 Da PI: 8.616 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 64.6 | 1.9e-20 | 16 | 61 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEdell ++v+++G+++W++I++ ++ gR++k+c++rw + Sme2.5_24183.1_g00002.1 16 KGPWSPEEDELLQQLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 61 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 57 | 4.6e-18 | 70 | 112 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEde +++a++++G++ W+tIar ++ gRt++ +k++w++ Sme2.5_24183.1_g00002.1 70 AFTPEEDETIIRAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 112 79******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 28.76 | 11 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.26E-32 | 13 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.7E-18 | 15 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-20 | 16 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-27 | 17 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.72E-17 | 18 | 60 | No hit | No description |
SMART | SM00717 | 3.8E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.467 | 68 | 117 | IPR017930 | Myb domain |
CDD | cd00167 | 2.59E-12 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-23 | 70 | 116 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-15 | 70 | 112 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 369 aa Download sequence Send to blast |
MASTCNSSKR DMDRVKGPWS PEEDELLQQL VQKHGPRNWS LISKSIPGRS GKSCRLRWCN 60 QLSPQVEHRA FTPEEDETII RAHARFGNKW ATIARLLNGR TDNAIKNHWN STLKRKCSSL 120 SADEGNELAD QIFENQQPPL KRSVSAGSAM PVSGFHFSPG SPSGSDSDSS LHVTSSSQSH 180 VFKPVARTGG IFPPSIDISS PLVDPPTSLS LSLPGVDSAE CSNRSSESTQ SKNPFQLMLP 240 AMQIPPPPPP PPPPSQSTAV PFERVSAIQQ SHQNPAGVSE QPDKVFVPFS KELLGVMQEM 300 IKTEVRNYMI GIEQRHQQQQ QQQHYQQQQQ FQQPSHKQPS GLGLGLCMQQ ASDGFRDRAA 360 NRMGISKFD |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 3e-40 | 15 | 116 | 3 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 3e-40 | 15 | 116 | 3 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00476 | DAP | Transfer from AT4G37260 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF122051 | 0.0 | AF122051.1 Solanum tuberosum clone 22 tuber-specific and sucrose-responsive element binding factor (TSF) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015065794.1 | 0.0 | transcription factor MYB44-like | ||||
TrEMBL | M1CC46 | 0.0 | M1CC46_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400064306 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1586 | 24 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37260.1 | 1e-84 | myb domain protein 73 |