PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_24183.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 369aa    MW: 40762.7 Da    PI: 8.616
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_24183.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding64.61.9e-201661147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                             +g+W++eEdell ++v+++G+++W++I++ ++ gR++k+c++rw + 
  Sme2.5_24183.1_g00002.1 16 KGPWSPEEDELLQQLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 61
                             79******************************.***********985 PP

2Myb_DNA-binding574.6e-1870112347
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              ++T+eEde +++a++++G++ W+tIar ++ gRt++ +k++w++ 
  Sme2.5_24183.1_g00002.1  70 AFTPEEDETIIRAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 112
                              79******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.761166IPR017930Myb domain
SuperFamilySSF466891.26E-3213109IPR009057Homeodomain-like
SMARTSM007175.7E-181564IPR001005SANT/Myb domain
PfamPF002493.7E-201661IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-271769IPR009057Homeodomain-like
CDDcd001673.72E-171860No hitNo description
SMARTSM007173.8E-1567115IPR001005SANT/Myb domain
PROSITE profilePS5129421.46768117IPR017930Myb domain
CDDcd001672.59E-1270113No hitNo description
Gene3DG3DSA:1.10.10.601.8E-2370116IPR009057Homeodomain-like
PfamPF002491.5E-1570112IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MASTCNSSKR DMDRVKGPWS PEEDELLQQL VQKHGPRNWS LISKSIPGRS GKSCRLRWCN  60
QLSPQVEHRA FTPEEDETII RAHARFGNKW ATIARLLNGR TDNAIKNHWN STLKRKCSSL  120
SADEGNELAD QIFENQQPPL KRSVSAGSAM PVSGFHFSPG SPSGSDSDSS LHVTSSSQSH  180
VFKPVARTGG IFPPSIDISS PLVDPPTSLS LSLPGVDSAE CSNRSSESTQ SKNPFQLMLP  240
AMQIPPPPPP PPPPSQSTAV PFERVSAIQQ SHQNPAGVSE QPDKVFVPFS KELLGVMQEM  300
IKTEVRNYMI GIEQRHQQQQ QQQHYQQQQQ FQQPSHKQPS GLGLGLCMQQ ASDGFRDRAA  360
NRMGISKFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-40151163104C-Myb DNA-Binding Domain
1msf_C3e-40151163104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1220510.0AF122051.1 Solanum tuberosum clone 22 tuber-specific and sucrose-responsive element binding factor (TSF) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065794.10.0transcription factor MYB44-like
TrEMBLM1CC460.0M1CC46_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000643060.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15862471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.11e-84myb domain protein 73