PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_23577.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NF-YC | ||||||||
Protein Properties | Length: 40aa MW: 4565.26 Da PI: 5.5486 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 41.7 | 2.6e-13 | 1 | 40 | 10 | 50 |
NF-YC 10 iekatdfknhelPlarikkilkadedvkmisaeaPvllska 50 +e++ dfkn elP++ ikkilk+d+dv+++s+e+P++l++a Sme2.5_23577.1_g00001.1 1 MEQVDDFKN-ELPITHIKKILKSDKDVHIVSTESPIFLANA 40 799****98.7***************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.5E-8 | 4 | 40 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 8.9E-6 | 8 | 39 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.3E-5 | 10 | 40 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 40 aa Download sequence Send to blast |
MEQVDDFKNE LPITHIKKIL KSDKDVHIVS TESPIFLANA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 1e-11 | nuclear factor Y, subunit C1 |