PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_20250.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 140aa    MW: 16027.7 Da    PI: 7.6974
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_20250.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.48e-112503585
                             EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                       B3 35 tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85
                             +  led+sg++W+v++  +++ ++  +++G  +F +++gL++g  ++F+++
  Sme2.5_20250.1_g00001.1  2 ETYLEDSSGQRWRVTM--CNHHSSLSIRQGCPKFSSDHGLDVGHLLIFHYV 50
                             6789************..******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100179.43E-8150No hitNo description
PROSITE profilePS508639.291166IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.3E-8250IPR015300DNA-binding pseudobarrel domain
PfamPF023627.2E-8250IPR003340B3 DNA binding domain
SuperFamilySSF1019367.46E-8250IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
KETYLEDSSG QRWRVTMCNH HSSLSIRQGC PKFSSDHGLD VGHLLIFHYV LEALLSKLEA  60
GIMTTNMLSR PVEDIPLPGP KYKNPTKHLS LEESIQETHH PVMQSICVYR ILMAEIFWTL  120
LLLLRTSHRF LLTPPLPLNA
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22102352