PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_17489.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GRAS | ||||||||
Protein Properties | Length: 321aa MW: 35342.5 Da PI: 5.0416 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 168.8 | 4.5e-52 | 132 | 312 | 1 | 186 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetsek.nsseelaalklf 84 lv++L++cAea+++++l+la+al++ ++ +s+ g +m++ a+yf+eAL ++++r +p++ e+ ns+ + + k+ Sme2.5_17489.1_g00001.1 132 LVNTLTACAEAIQENNLSLADALISDIRGFtVSQIGVAMKKEATYFAEALYHKIHR--------TNPQDIVESsNSIVQ-FLSKII 208 6899************************99789999********************........223333222034444.455899 PP GRAS 85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakf 168 +e + +lkf+h+taNq Ilea++ ++rvH+iDf+++qG QW a+lqaLa Rp+gpp++R+Tg+g + + s++ l+e+g++La++ Sme2.5_17489.1_g00001.1 209 YEDCLFLKFAHVTANQSILEAFAYSKRVHVIDFSLNQGSQWSAFLQALALRPGGPPTFRLTGIGGHYRTdeSTDGLQEVGSKLAQL 294 ***************************************************************986665789************** PP GRAS 169 Aeelgvpfefnvlvakrl 186 A+++gv+fef+ lv+++l Sme2.5_17489.1_g00001.1 295 AQSVGVEFEFHGLVVHTL 312 ************998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 33.903 | 106 | 321 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.5E-49 | 132 | 312 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MSSTEISMET IIEDEDSFVS NANAIIYAAS DISGWTQSLI SDNNIPNSSS STSVEEHHHH 60 QQISTAAGDG DSMIVSSSAS CRSFNNEKKI DDQQEIRIFN VEFRALCHKT QKSCSRSELR 120 SNLVNEETSV RLVNTLTACA EAIQENNLSL ADALISDIRG FTVSQIGVAM KKEATYFAEA 180 LYHKIHRTNP QDIVESSNSI VQFLSKIIYE DCLFLKFAHV TANQSILEAF AYSKRVHVID 240 FSLNQGSQWS AFLQALALRP GGPPTFRLTG IGGHYRTDES TDGLQEVGSK LAQLAQSVGV 300 EFEFHGLVVH TLWGISMGMP L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 5e-24 | 139 | 304 | 26 | 192 | Protein SCARECROW |
5b3h_A | 5e-24 | 139 | 304 | 25 | 191 | Protein SCARECROW |
5b3h_D | 5e-24 | 139 | 304 | 25 | 191 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269|PubMed:15347801}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004249633.3 | 1e-162 | DELLA protein GAI | ||||
Swissprot | Q7Y1B6 | 2e-66 | GAI_SOLLC; DELLA protein GAI | ||||
TrEMBL | A0A3Q7IN05 | 1e-152 | A0A3Q7IN05_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g086380.1.1 | 1e-161 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12864 | 11 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01570.1 | 2e-64 | GRAS family protein |
Publications ? help Back to Top | |||
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