PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_17489.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 321aa    MW: 35342.5 Da    PI: 5.0416
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_17489.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS168.84.5e-521323121186
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetsek.nsseelaalklf 84 
                              lv++L++cAea+++++l+la+al++ ++   +s+ g +m++ a+yf+eAL ++++r         +p++  e+ ns+ + +  k+ 
  Sme2.5_17489.1_g00001.1 132 LVNTLTACAEAIQENNLSLADALISDIRGFtVSQIGVAMKKEATYFAEALYHKIHR--------TNPQDIVESsNSIVQ-FLSKII 208
                              6899************************99789999********************........223333222034444.455899 PP

                     GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakf 168
                              +e + +lkf+h+taNq Ilea++ ++rvH+iDf+++qG QW a+lqaLa Rp+gpp++R+Tg+g +  +  s++ l+e+g++La++
  Sme2.5_17489.1_g00001.1 209 YEDCLFLKFAHVTANQSILEAFAYSKRVHVIDFSLNQGSQWSAFLQALALRPGGPPTFRLTGIGGHYRTdeSTDGLQEVGSKLAQL 294
                              ***************************************************************986665789************** PP

                     GRAS 169 Aeelgvpfefnvlvakrl 186
                              A+++gv+fef+ lv+++l
  Sme2.5_17489.1_g00001.1 295 AQSVGVEFEFHGLVVHTL 312
                              ************998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.903106321IPR005202Transcription factor GRAS
PfamPF035141.5E-49132312IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MSSTEISMET IIEDEDSFVS NANAIIYAAS DISGWTQSLI SDNNIPNSSS STSVEEHHHH  60
QQISTAAGDG DSMIVSSSAS CRSFNNEKKI DDQQEIRIFN VEFRALCHKT QKSCSRSELR  120
SNLVNEETSV RLVNTLTACA EAIQENNLSL ADALISDIRG FTVSQIGVAM KKEATYFAEA  180
LYHKIHRTNP QDIVESSNSI VQFLSKIIYE DCLFLKFAHV TANQSILEAF AYSKRVHVID  240
FSLNQGSQWS AFLQALALRP GGPPTFRLTG IGGHYRTDES TDGLQEVGSK LAQLAQSVGV  300
EFEFHGLVVH TLWGISMGMP L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-2413930426192Protein SCARECROW
5b3h_A5e-2413930425191Protein SCARECROW
5b3h_D5e-2413930425191Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269|PubMed:15347801}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004249633.31e-162DELLA protein GAI
SwissprotQ7Y1B62e-66GAI_SOLLC; DELLA protein GAI
TrEMBLA0A3Q7IN051e-152A0A3Q7IN05_SOLLC; Uncharacterized protein
STRINGSolyc10g086380.1.11e-161(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128641119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.12e-64GRAS family protein
Publications ? help Back to Top
  1. Nir I, et al.
    The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure.
    Plant Cell, 2017. 29(12): p. 3186-3197
    [PMID:29150547]