PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_17281.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NF-YC | ||||||||
Protein Properties | Length: 118aa MW: 13212.5 Da PI: 7.3377 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 53.5 | 5.2e-17 | 1 | 44 | 26 | 69 |
NF-YC 26 ikkilkadedvkmisaeaPvllskacelfileltlrswlhaeen 69 +k+i+k++ dv ++saeaP+ll k cel+i eltl sw h++e+ Sme2.5_17281.1_g00002.1 1 MKRIMKSNSDVLKVSAEAPILLMKVCELLIGELTLHSWRHTQEQ 44 59****************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 6.48E-9 | 1 | 44 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.1E-8 | 1 | 43 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 8.1E-14 | 2 | 44 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
MKRIMKSNSD VLKVSAEAPI LLMKVCELLI GELTLHSWRH TQEQLAVLRV IIGNLAMPVA 60 PSVYVHPWFQ VREVVENYPY ATGGNNGQGN LDPQRCLLKA IGPLSCEYPY DYCPCILA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54830.3 | 2e-12 | nuclear factor Y, subunit C3 |