PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_17281.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NF-YC

Protein Properties

Length: 826aa MW: 93434.5 Da PI: 7.1167

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_17281.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	53.7	4.6e-17	33	81	1	46
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvl 46 ql++fw++q i++ ++fknh+lP++ri+ki+k+ dv+mis eaP+l Sme2.5_17281.1_g00001.1 33 QLQMFWASQreeIQQINNFKNHKLPISRIRKIMKSGRDVRMISGEAPIL 81 89***9976777899****************************97 PP
2	NF-YC	83.8	1.9e-26	82	149	35	102
NF-YC 35 dvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprdelk 102 dv+mis eaP+ll+kacel+il+++lr+wl+a+e krrtlkk+d +a+ +t++fdflvd+ rde+k Sme2.5_17281.1_g00001.1 82 DVRMISGEAPILLAKACELMILQFSLRAWLQAQEYKRRTLKKTDFMDAIRQTEVFDFLVDVFSRDEIK 149 8***************************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.51E-20	18	139	IPR009072	Histone-fold
Pfam	PF00125	2.1E-10	35	131	IPR007125	Histone H2A/H2B/H3
Gene3D	G3DSA:1.10.20.10	2.2E-10	49	81	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	2.6E-16	82	143	IPR009072	Histone-fold
Pfam	PF03732	1.4E-7	308	379	IPR005162	Retrotransposon gag domain
Pfam	PF07714	1.4E-6	519	600	IPR001245	Serine-threonine/tyrosine-protein kinase catalytic domain
SuperFamily	SSF56112	2.67E-12	519	605	IPR011009	Protein kinase-like domain
Gene3D	G3DSA:3.30.200.20	1.4E-12	519	588	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006468	Biological Process	protein phosphorylation
GO:0003677	Molecular Function	DNA binding
GO:0004672	Molecular Function	protein kinase activity
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 826 aa Download sequence Send to blast
MADNSHQSAA EVAAVVQSSG DPSGHLIQQQ PDQLQMFWAS QREEIQQINN FKNHKLPISR 60 IRKIMKSGRD VRMISGEAPI LDVRMISGEA PILLAKACEL MILQFSLRAW LQAQEYKRRT 120 LKKTDFMDAI RQTEVFDFLV DVFSRDEIKE EATGLWPGMG GPTSGDPPME LPAPPTRQPA 180 PSMGQPAPPM VQPAPSMGQP GPSGMMTPRR AMPWVTLSRY VQPTLQAWQS HLQAAEDNPS 240 ATGGNSGQGN LQNQRPRHEP NQPSQTLGLK IDLPEFEGIS HPDEFIDWLH TVEQVFEVKN 300 LNDSQKVKLV AIKLRKHASI WWEHVRNRRV REGKPKIQSW SKMRQKLIAK FLSAQYRQEA 360 FIEYHHLKQK GMSVEQYTRQ DICTRVPLVM RLQNDPNITA PHLQLEYDNK SLPVEEVGIV 420 EAAIPATDEI AGYIAVQGQP EDLSTVDFPT CESIRMSQKV DKTGERTVVV VNFSARCNVP 480 GLVSDLIKCG KMKEFSNVEK QSGLNQNLLS SRMKSVQTAG STGDLYKGSF HDQEGGIRIL 540 KPECLSEDVR RDFAQEIYIW RKVRRKNVVQ FVSACTKPPC LCIISEFVSG RSLYDFWHHG 600 HLKVYQWSAS DWDELQSSTR RAVQNLIAKN RGSNVSLYEP LSVPMVPWED VDLNSVLGLP 660 RTQRNKDSVM VVVDRFSKMA RFTACNKTFD ASQEIVRLYG DAEECAEHIK QKLISSDSAS 720 SLSVSFTVLK GSLVSSVDTN PPQYYIASNP YDTENSPLYN FDGQTFTALQ EPYASEIQFI 780 KLGPDGHLWL YQLDVFDWKW LDEIMNPYSG NCGYPMTFMV IPVRCI

Sequence ? help Back to Top

Protein Sequence Length: 826 aa Download sequence Send to blast

MADNSHQSAA EVAAVVQSSG DPSGHLIQQQ PDQLQMFWAS QREEIQQINN FKNHKLPISR  60
IRKIMKSGRD VRMISGEAPI LDVRMISGEA PILLAKACEL MILQFSLRAW LQAQEYKRRT  120
LKKTDFMDAI RQTEVFDFLV DVFSRDEIKE EATGLWPGMG GPTSGDPPME LPAPPTRQPA  180
PSMGQPAPPM VQPAPSMGQP GPSGMMTPRR AMPWVTLSRY VQPTLQAWQS HLQAAEDNPS  240
ATGGNSGQGN LQNQRPRHEP NQPSQTLGLK IDLPEFEGIS HPDEFIDWLH TVEQVFEVKN  300
LNDSQKVKLV AIKLRKHASI WWEHVRNRRV REGKPKIQSW SKMRQKLIAK FLSAQYRQEA  360
FIEYHHLKQK GMSVEQYTRQ DICTRVPLVM RLQNDPNITA PHLQLEYDNK SLPVEEVGIV  420
EAAIPATDEI AGYIAVQGQP EDLSTVDFPT CESIRMSQKV DKTGERTVVV VNFSARCNVP  480
GLVSDLIKCG KMKEFSNVEK QSGLNQNLLS SRMKSVQTAG STGDLYKGSF HDQEGGIRIL  540
KPECLSEDVR RDFAQEIYIW RKVRRKNVVQ FVSACTKPPC LCIISEFVSG RSLYDFWHHG  600
HLKVYQWSAS DWDELQSSTR RAVQNLIAKN RGSNVSLYEP LSVPMVPWED VDLNSVLGLP  660
RTQRNKDSVM VVVDRFSKMA RFTACNKTFD ASQEIVRLYG DAEECAEHIK QKLISSDSAS  720
SLSVSFTVLK GSLVSSVDTN PPQYYIASNP YDTENSPLYN FDGQTFTALQ EPYASEIQFI  780
KLGPDGHLWL YQLDVFDWKW LDEIMNPYSG NCGYPMTFMV IPVRCI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-27	40	145	2	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU468256	5e-44	CU468256.3 S.lycopersicum DNA sequence from clone LE_HBa-66O12 on chromosome 4, complete sequence.
GenBank	HG975443	5e-44	HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBank	HG975516	5e-44	HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	7e-48	nuclear factor Y, subunit C1