PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_16172.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 423aa    MW: 45982.8 Da    PI: 9.9312
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_16172.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00022189211223
                              EETTTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                              +C++Cg+ F  ++  + H  + H
  Sme2.5_16172.1_g00001.1 189 TCHKCGEQFVKWEAVEAHHLSkH 211
                              8*****************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280190211IPR007087Zinc finger, C2H2
SuperFamilySSF563995.66E-24213422No hitNo description
Gene3DG3DSA:3.90.228.101.2E-9220421IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MPAVWFALKK SLQCRSEIKD VYDPRSGGRN LSKISTKKAT TVRSGCSRSI ANLKDVIHGS  60
KRHMEKPPLQ SPRSIGSSEL LNPITHEVVL SNSTCELKIT SCNFQDGNGS SGNNVESISA  120
FMGTLKPGTP GPGGHHIGSS RKYRGYGSPI RKGSSSGNLS RKTGPGFGSV VSRPKASYGA  180
DSHGFSALTC HKCGEQFVKW EAVEAHHLSK HAVTELVEGD SSRKIVEIIC RTSMSKPENN  240
SNGIERILKV HNMQKVLAQF EEYRELVKIK ASKLAKKHPR CLADGNELLR FYGTSVECSL  300
GINGSSSLCT SEKCKVCKIL RHGFSIKKEI NGGVGVFTAS TSGRALEAIE ENDENILSWR  360
KALIVCRVIA GRVHRPLENV QQLIGQSGFD SLAGKVGLYS NIEELYLLNP KALLPCFVII  420
CKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015063770.10.0uncharacterized protein LOC107009029
TrEMBLM1BYS00.0M1BYS0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000559290.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22442235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-163C2H2 family protein