PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_15558.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 207aa    MW: 23284 Da    PI: 10.3943
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_15558.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.3e-1859109256
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                               y+GVr ++ +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+ +++g+
  Sme2.5_15558.1_g00001.1  59 IYHGVRKRS-WGKWVSEIREPRK---KSRIWLGTFATPEMAARAHDVAAIAIKGH 109
                              69****888.**********843...6***********************99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.97E-3258118No hitNo description
PfamPF008476.9E-1358109IPR001471AP2/ERF domain
PROSITE profilePS5103222.14259116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-3059117IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-2159117IPR016177DNA-binding domain
SMARTSM003801.8E-3559122IPR001471AP2/ERF domain
PRINTSPR003671.1E-96071IPR001471AP2/ERF domain
PRINTSPR003671.1E-98298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MEEKDQSPII FNSNETTSSS SLTKRPITLA PSKQQTNYYK KFKSSTEKTK KIDDSKHPIY  60
HGVRKRSWGK WVSEIREPRK KSRIWLGTFA TPEMAARAHD VAAIAIKGHL ALLNFPELAH  120
QFPKPTSKFP KDIQSAAAKA AALDISPMEK QSKDELKEML CSVTIIHHGI WLELKAMALI  180
TVNFGLKKIS VCGINTATEL YSKPHNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-18551161072Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-170HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006355509.12e-88PREDICTED: ethylene-responsive transcription factor ERF039-like
SwissprotQ9LYD31e-45DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLM1A1251e-88M1A125_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000123142e-89(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-34ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]