PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_15108.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | BES1 | ||||||||
Protein Properties | Length: 210aa MW: 23317.6 Da PI: 11.6437 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 42.7 | 2.2e-13 | 48 | 80 | 3 | 35 |
DUF822 3 sgrkptwkErEnnkrRERrRRaiaakiyaGLRa 35 + rk+++kE+E++k+RER+RRai+++++aGLR+ Sme2.5_15108.1_g00001.1 48 KSRKEREKEKERTKLRERHRRAITSRMLAGLRQ 80 789*****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 1.4E-12 | 48 | 108 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MSNPQFPNQN DDPNPNQPLQ PRSHPQPRRP RGFAATNAAA PAAGTTNKSR KEREKEKERT 60 KLRERHRRAI TSRMLAGLRQ FYLITPLTQK CSLAVNKVGK AMGCWGVEPL QRQGFRRRRL 120 SKGGTVGLNG PTSLASKSSK DIVYISTNRK WEIPVLTESS KHSARNCSPV TFLELRSFLL 180 SLFPALICSS DSNNNNVSSG EAMGTTRLGM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 114 | 119 | FRRRRL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 5e-81 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004244442.1 | 8e-23 | beta-amylase 8 isoform X2 | ||||
Refseq | XP_010324502.1 | 8e-23 | beta-amylase 8 isoform X1 | ||||
Refseq | XP_010324503.1 | 8e-23 | beta-amylase 8 isoform X3 | ||||
Refseq | XP_010324504.1 | 8e-23 | beta-amylase 8 isoform X4 | ||||
Refseq | XP_010324505.1 | 8e-23 | beta-amylase 8 isoform X5 | ||||
Refseq | XP_025888445.1 | 8e-23 | beta-amylase 8 isoform X5 | ||||
TrEMBL | A0A3Q7IDQ8 | 2e-21 | A0A3Q7IDQ8_SOLLC; Beta-amylase | ||||
STRING | Solyc08g005780.2.1 | 3e-22 | (Solanum lycopersicum) |