PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_15021.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 358aa    MW: 40549.8 Da    PI: 10.0434
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_15021.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.52e-31292349359
                              -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++++tYegeHnh+
  Sme2.5_15021.1_g00001.1 292 DEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPSMLIVTYEGEHNHP 349
                              9************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105336.5E-7270288IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.3E-33278350IPR003657WRKY domain
PROSITE profilePS5081129.884285351IPR003657WRKY domain
SuperFamilySSF1182904.84E-27288350IPR003657WRKY domain
SMARTSM007749.4E-39290350IPR003657WRKY domain
PfamPF031062.6E-27292349IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MEEIEEANRV AVESCHRVIS MLSQPHDQEQ FGNLVKETGE AVHKFKKVVT LLNSNLGHAR  60
VRKAKKILTP FPHNLLLETP SCKIDDQPKP LHLLPNTRLE IGSNVNRTHP SLELSSHSKN  120
PLQLAQQTPL SSYHFVQQQQ QQQLQQQQQR RYQLQQQQMK QQADMMYRRS NSGISLNFDS  180
STCTPTMSST RSFISSLSID ASVANMDGNA FHFIGPSRSA DESSFQHKKR CSGRGEEGSV  240
KCGSSGIALR IRAHFNTRNG APEEERREVK HRVKRSIKVP AISNKLADIP PDEYSWRKYG  300
QKPIKGSPHP RGYYKCSSMR GCPARKHVER CLEEPSMLIV TYEGEHNHPR LPSQSANA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-202863531076WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-112HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351633.10.0PREDICTED: probable WRKY transcription factor 21
SwissprotO043361e-109WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLM1B7N30.0M1B7N3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000389860.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32712350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.13e-96WRKY DNA-binding protein 21