PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_14531.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | HB-other | ||||||||
Protein Properties | Length: 186aa MW: 21664.3 Da PI: 2.7534 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 21.1 | 5.4e-07 | 1 | 24 | 30 | 53 |
HHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 30 reeLAkklgLterqVkvWFqNrRa 53 r +L++++gL+ ++ vWFqN+R+ Sme2.5_14531.1_g00001.1 1 RNQLSREVGLDPKDTMVWFQNKRT 24 789********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00046 | 1.8E-4 | 1 | 24 | IPR001356 | Homeobox domain |
CDD | cd00086 | 0.00716 | 1 | 25 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.9E-5 | 1 | 24 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.22 | 1 | 29 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
RNQLSREVGL DPKDTMVWFQ NKRTQPEHEI ISNIIPSVLE RSFVMGSNFD DDDDDDDDDD 60 DDDDDDDDDD DDDDDDDDDD DDNDDDDDDN DDDDDDDDDD DDDDDDDDDD DDDDDDDDDD 120 DDDDDDDDDD DDDDDDDDDD DDDDDDDDDD DDDDDDDDDD DDDDEMMMMM TTMMTTMMMT 180 MMMMTI |