PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_14531.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HB-other
Protein Properties Length: 186aa    MW: 21664.3 Da    PI: 2.7534
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_14531.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox21.15.4e-071243053
                             HHHHHHHCTS-HHHHHHHHHHHHH CS
                 Homeobox 30 reeLAkklgLterqVkvWFqNrRa 53
                             r +L++++gL+ ++  vWFqN+R+
  Sme2.5_14531.1_g00001.1  1 RNQLSREVGLDPKDTMVWFQNKRT 24
                             789********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000461.8E-4124IPR001356Homeobox domain
CDDcd000860.00716125No hitNo description
Gene3DG3DSA:1.10.10.605.9E-5124IPR009057Homeodomain-like
PROSITE profilePS5007110.22129IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
RNQLSREVGL DPKDTMVWFQ NKRTQPEHEI ISNIIPSVLE RSFVMGSNFD DDDDDDDDDD  60
DDDDDDDDDD DDDDDDDDDD DDNDDDDDDN DDDDDDDDDD DDDDDDDDDD DDDDDDDDDD  120
DDDDDDDDDD DDDDDDDDDD DDDDDDDDDD DDDDDDDDDD DDDDEMMMMM TTMMTTMMMT  180
MMMMTI