PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_14468.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 555aa    MW: 62131.3 Da    PI: 6.0064
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_14468.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS422.14.7e-1291855541373
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              l++lL++cA+a+++++le  + l+a+ +  +s +gdp+qRl ay++e+L ar   s++++yk+l+++e +    ++ ++++++++e
  Sme2.5_14468.1_g00001.1 185 LKQLLIACARALADNKLEDFEILVAKARSVVSVTGDPIQRLGAYIVEGLVARTELSGTTIYKSLRCKEPA---GKDLFSYMHILYE 267
                              689******************************************************************9...99*********** PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170
                              ++P+lkf++++aN aI+ea  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p +RiTg+++p s+  + + l+++++rL+ + e
  Sme2.5_14468.1_g00001.1 268 ICPYLKFGYMAANGAIVEACRNEDRIHIIDFQIAQGTQWMTLLQALAARPGGAPYVRITGIDDPVSQyaRGDGLSAVAKRLSAISE 353
                              ****************************************************************999999**************** PP

                     GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                              ++++ +ef++ v     +++ ++L+v+pgEalaVn+ lqlh+++desv+++++rde+++++ksl Pk+v++veqe+++n+++Fl r
  Sme2.5_14468.1_g00001.1 354 KFNIAVEFHA-VPVFAPEITRDMLDVRPGEALAVNFPLQLHHTPDESVDVNNPRDELIRMIKSLCPKIVTLVEQESNTNTAPFLPR 438
                              **********.688889999****************************************************************** PP

                     GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                              f+eal+yy a+f+s++++lpr+ +eri+vE+++l+r+ivnv+aceg+er+erhe l+kW++r+++aGF+++pls++++  +k llr
  Sme2.5_14468.1_g00001.1 439 FVEALNYYHAMFESIDVTLPRDMKERINVEQHCLARDIVNVIACEGKERVERHELLGKWKSRFMMAGFQQYPLSSYVNLVIKDLLR 524
                              ************************************************************************************** PP

                     GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                              +++ + y++ e++g+++lgWk r+Lvs+SaW
  Sme2.5_14468.1_g00001.1 525 RYS-EHYTLVEKDGAMLLGWKARNLVSASAW 554
                              ***.55************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.711159536IPR005202Transcription factor GRAS
PfamPF035141.6E-126185554IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MDSHHFVGYT VTARDLSYSS YPTVNRPFGT SKFDSGNSPL VNYFNSETFT AVSDYQEQHS  60
HTENLSGASS SSDSSLDYNQ YFHRPSPSED CLPEVPYGQN MTHTLLQLES ALMGPDEDAT  120
KSSPYLGESK GAQTSSQRSR AWNTEAQVLC QTQQSLVSIL NGTQSNKRDK VMEDLPLQSF  180
SSSSLKQLLI ACARALADNK LEDFEILVAK ARSVVSVTGD PIQRLGAYIV EGLVARTELS  240
GTTIYKSLRC KEPAGKDLFS YMHILYEICP YLKFGYMAAN GAIVEACRNE DRIHIIDFQI  300
AQGTQWMTLL QALAARPGGA PYVRITGIDD PVSQYARGDG LSAVAKRLSA ISEKFNIAVE  360
FHAVPVFAPE ITRDMLDVRP GEALAVNFPL QLHHTPDESV DVNNPRDELI RMIKSLCPKI  420
VTLVEQESNT NTAPFLPRFV EALNYYHAMF ESIDVTLPRD MKERINVEQH CLARDIVNVI  480
ACEGKERVER HELLGKWKSR FMMAGFQQYP LSSYVNLVIK DLLRRYSEHY TLVEKDGAML  540
LGWKARNLVS ASAWF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-631825541374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ2612450.0GQ261245.1 Solanum lycopersicum cultivar Rio Grande PtoR Hop-interacting protein THI039 mRNA, complete cds.
GenBankHG9755240.0HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363507.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLM1BYZ50.0M1BYZ5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000561200.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34412448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-176GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]