PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_14424.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 494aa    MW: 55008.7 Da    PI: 5.322
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_14424.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS340.33.3e-1041094891374
                     GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlar..svselykal.ppsetseknsseelaa 80 
                              lv+lL+++Aea++  +++  la+ +L rl+elasp+g ++m+Rlaa+ft AL+a l +  s++ l+k + +p+ ++e+++ ++laa
  Sme2.5_14424.1_g00001.1 109 LVHLLMAAAEALTGVNKSreLARVILVRLKELASPNGaTNMERLAAHFTDALQALLDGaaSGTLLAKHVfSPNYKDEQHQGDVLAA 194
                              68***********85554449****************99*****************99434444555554777777888******* PP

                     GRAS  81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetg 162
                              ++l++++sP++kf+h+taNqaIle+v +++rvHi+D+di++G+QW++L+qaL sR++gpp  +lRiT+++++ sg  s  +++etg
  Sme2.5_14424.1_g00001.1 195 FQLLQDMSPFVKFGHFTANQAILESVVHDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPtpHLRITALSRSGSGrrSFGTVQETG 280
                              ********************************************************776556*********888899999****** PP

                     GRAS 163 erLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh 248
                              +rL+ fA+++g pf+f+    ++ e +++ +L++ +gEal++n++l+l ++  +  ++     ++L+  k+l+P++v++ve+e+  
  Sme2.5_14424.1_g00001.1 281 RRLTAFAASIGQPFSFHHCRLDTDEIFKPTNLKLVRGEALIINCMLHLPHFSYRASDS---VASFLSRSKTLNPRLVTLVEEELRS 363
                              ******************989999999***********************98554444...459*******************888 PP

                     GRAS 249 ..nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332
                                ++e F+ rfl++l++ysal+dslea++p +s++r+ vE+++lg++i+  ++   ++r e+++   +W erl++ GF + ++s  
  Sme2.5_14424.1_g00001.1 364 igEEEGFVGRFLDTLHHYSALYDSLEAGFPLQSRARTLVEQVFLGPRITGSLTRIYRARGEEER--WSWGERLGALGFCESNISFA 447
                              777889***************************************************9877666..89****************** PP

                     GRAS 333 aakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                              + +qaklll  ++ dgyrvee   + lvlgWk+r+L+s+S W+
  Sme2.5_14424.1_g00001.1 448 NHCQAKLLLGLFN-DGYRVEEIgTNKLVLGWKSRRLLSASIWT 489
                              *************.******9768999***************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.48883469IPR005202Transcription factor GRAS
PfamPF035141.1E-101109489IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MEIMVDETIS DFDYYASLST PTTTITTTST SSSSEDDHGR TWNDWSPVFD WDAFSGGNNF  60
QDLIECMIQG NNSSGNYFYT SEDSAGMIEE EGSQDSNNNQ SEDITGLKLV HLLMAAAEAL  120
TGVNKSRELA RVILVRLKEL ASPNGATNME RLAAHFTDAL QALLDGAASG TLLAKHVFSP  180
NYKDEQHQGD VLAAFQLLQD MSPFVKFGHF TANQAILESV VHDRRVHIVD YDIMEGIQWA  240
SLMQALVSRK DGPPTPHLRI TALSRSGSGR RSFGTVQETG RRLTAFAASI GQPFSFHHCR  300
LDTDEIFKPT NLKLVRGEAL IINCMLHLPH FSYRASDSVA SFLSRSKTLN PRLVTLVEEE  360
LRSIGEEEGF VGRFLDTLHH YSALYDSLEA GFPLQSRART LVEQVFLGPR ITGSLTRIYR  420
ARGEEERWSW GERLGALGFC ESNISFANHC QAKLLLGLFN DGYRVEEIGT NKLVLGWKSR  480
RLLSASIWTT TDTD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-60924891378Protein SCARECROW
5b3h_D1e-60924891378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016570146.10.0PREDICTED: nodulation-signaling pathway 2 protein
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A2G3CLP60.0A0A2G3CLP6_CAPCH; Nodulation-signaling pathway 2 protein
STRINGPGSC0003DMT4000314750.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122411923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-148GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]