PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_14308.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

LBD

Protein Properties

Length: 824aa MW: 90643.1 Da PI: 6.5971

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_14308.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	110.8	9.8e-35	96	195	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +CaaCk+l++ C+++Cvla +fp ++ +f vh++FGasn++kll++lpe++r da+ s+v +A+ar+rdPvyG++g i +lq+q Sme2.5_14308.1_g00001.1 96 SCAACKFLGQICTENCVLATCFPPDDLINFTTVHRVFGASNIIKLLQELPESQRADAVISMVNKANARLRDPVYGCAGSICHLQKQ 181 6*********************************************************************************** PP DUF260 87 leqlkaelallkee 100 + l+++la++k+e Sme2.5_14308.1_g00001.1 182 VGDLQVQLAKAKTE 195 *******99875 PP
2	DUF260	62.2	1.4e-19	225	272	1	48
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllka 48 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++kll+ Sme2.5_14308.1_g00001.1 225 PCAACKILRRRCTEKCVLAPYFPPSDPFKFTAAHRVFGASNIIKLLQI 272 7********************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.998	95	196	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-34	96	193	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	15.161	224	327	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.6E-19	225	271	IPR004883	Lateral organ boundaries, LOB
SuperFamily	SSF52540	9.97E-27	438	632	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Gene3D	G3DSA:3.40.50.300	1.3E-9	457	591	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF00931	1.2E-15	472	590	IPR002182	NB-ARC
PRINTS	PR00364	9.4E-11	478	493	No hit	No description
SuperFamily	SSF52047	2.75E-9	534	569	No hit	No description
PRINTS	PR00364	9.4E-11	538	552	No hit	No description
SuperFamily	SSF52047	2.75E-9	608	815	No hit	No description
Gene3D	G3DSA:3.80.10.10	6.4E-5	628	815	IPR032675	Leucine-rich repeat domain, L domain-like
PRINTS	PR00364	9.4E-11	798	814	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0043531	Molecular Function	ADP binding

Sequence ? help Back to Top
Protein Sequence Length: 824 aa Download sequence Send to blast
MEYSLCSEMG IIATSSLSSS YSSSGSPSSS SSPSPSTNYP LSPPAEVTSS PPSSSAVSSS 60 SSSPNSSPTD LPPEATSLPS SSRAVLPPVT VVGISSCAAC KFLGQICTEN CVLATCFPPD 120 DLINFTTVHR VFGASNIIKL LQELPESQRA DAVISMVNKA NARLRDPVYG CAGSICHLQK 180 QVGDLQVQLA KAKTETISSS SPRLVSPSSS SSPPPVSMPI VVVSPCAACK ILRRRCTEKC 240 VLAPYFPPSD PFKFTAAHRV FGASNIIKLL QISEMEIGLA VGGAFLSSAL NVLFDRISPQ 300 GDLFKMFQKH KHHVRLLKTL RMTLLGLQAV LSDGQNKLTS NPYMSQWLNE IQDAVDCAEN 360 LIEDVNSEAL RLKVEGQHQN FAKTVSNQQV SDCNLCLSDD FYLNVRDKLE DTIETLEELE 420 KQNDCLGLRE YLGLGMQGTR RPSSSLIDES DIVGRLNEIE ELIDLSLSYE ANGKNVSIVC 480 AVGIGCVGKT TLAKTVYNDE NVKYQFGLKD WVLLQAIDLF DCIVNTNLNQ LQIKLKESLK 540 DKKFLIVLDD VWNDNYEECY ELRNLFVQGD IGSKIIVTTR KESVALMMGC GVVNQGDFEK 600 LKPLFKSEQL RTWLPISIQH DYLLRKFIDL CHPDIRNTSH LKMPLHLSKL KSLHVLVGAK 660 FLLGGHSGSR MEDLGELHNL YGSLSIVELQ NVVDRREALK LVQLSLSNCK DCDSLPALRQ 720 LPSLKFLEII RMRQIIEVTE EFYSSSSSKS LLTLRSLNLQ NCGNGSNGNW IILGNGEFPA 780 LKILSIEDSP KLIEKFPENL SSLTGLGISK CHQLRWRHLS NFLV

Sequence ? help Back to Top

Protein Sequence Length: 824 aa Download sequence Send to blast

MEYSLCSEMG IIATSSLSSS YSSSGSPSSS SSPSPSTNYP LSPPAEVTSS PPSSSAVSSS  60
SSSPNSSPTD LPPEATSLPS SSRAVLPPVT VVGISSCAAC KFLGQICTEN CVLATCFPPD  120
DLINFTTVHR VFGASNIIKL LQELPESQRA DAVISMVNKA NARLRDPVYG CAGSICHLQK  180
QVGDLQVQLA KAKTETISSS SPRLVSPSSS SSPPPVSMPI VVVSPCAACK ILRRRCTEKC  240
VLAPYFPPSD PFKFTAAHRV FGASNIIKLL QISEMEIGLA VGGAFLSSAL NVLFDRISPQ  300
GDLFKMFQKH KHHVRLLKTL RMTLLGLQAV LSDGQNKLTS NPYMSQWLNE IQDAVDCAEN  360
LIEDVNSEAL RLKVEGQHQN FAKTVSNQQV SDCNLCLSDD FYLNVRDKLE DTIETLEELE  420
KQNDCLGLRE YLGLGMQGTR RPSSSLIDES DIVGRLNEIE ELIDLSLSYE ANGKNVSIVC  480
AVGIGCVGKT TLAKTVYNDE NVKYQFGLKD WVLLQAIDLF DCIVNTNLNQ LQIKLKESLK  540
DKKFLIVLDD VWNDNYEECY ELRNLFVQGD IGSKIIVTTR KESVALMMGC GVVNQGDFEK  600
LKPLFKSEQL RTWLPISIQH DYLLRKFIDL CHPDIRNTSH LKMPLHLSKL KSLHVLVGAK  660
FLLGGHSGSR MEDLGELHNL YGSLSIVELQ NVVDRREALK LVQLSLSNCK DCDSLPALRQ  720
LPSLKFLEII RMRQIIEVTE EFYSSSSSKS LLTLRSLNLQ NCGNGSNGNW IILGNGEFPA  780
LKILSIEDSP KLIEKFPENL SSLTGLGISK CHQLRWRHLS NFLV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-30	88	270	3	129	LOB family transfactor Ramosa2.1
5ly0_B	2e-30	88	270	3	129	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ206032	0.0	DQ206032.1 Solanum melongena clone 3459 I2 pseudogene, partial sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015170991.1	1e-137	PREDICTED: LOW QUALITY PROTEIN: putative disease resistance protein At3g14460
TrEMBL	A0A2G2VPW0	1e-151	A0A2G2VPW0_CAPBA; Uncharacterized protein
TrEMBL	B3F574	1e-150	B3F574_SOLDE; Disease resistance protein R3a-like protein (Fragment)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	3e-43	LOB domain-containing protein 1