PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_13686.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 328aa    MW: 37361.8 Da    PI: 6.1064
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_13686.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.71.7e-151461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT +Ed++l+ +v+++G g+W+  + + g+ R++ +c++rw +yl
  Sme2.5_13686.1_g00002.1 14 KGPWTSDEDQKLLAYVEEHGYGSWSDLPVRAGLQRCGRSCRLRWINYL 61
                             79********************************************97 PP
2Myb_DNA-binding54.33e-1767112148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              rg++T eE+  + +++++lG++ W+tIa++++ +R+++++k++w+++l
  Sme2.5_13686.1_g00002.1  67 RGKFTSEEERTIFQLHALLGNR-WSTIASYLP-NRSDNEIKNYWNTHL 112
                              89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-23564IPR009057Homeodomain-like
PROSITE profilePS5129415.96961IPR017930Myb domain
SuperFamilySSF466898.79E-3111108IPR009057Homeodomain-like
SMARTSM007173.0E-101363IPR001005SANT/Myb domain
PfamPF002499.2E-141461IPR001005SANT/Myb domain
CDDcd001675.67E-91661No hitNo description
PROSITE profilePS5129426.05362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.6E-2665117IPR009057Homeodomain-like
SMARTSM007174.8E-1766114IPR001005SANT/Myb domain
PfamPF002497.1E-1667112IPR001005SANT/Myb domain
CDDcd001676.86E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MGRSPCLDKE GLKKGPWTSD EDQKLLAYVE EHGYGSWSDL PVRAGLQRCG RSCRLRWINY  60
LRPNIKRGKF TSEEERTIFQ LHALLGNRWS TIASYLPNRS DNEIKNYWNT HLKKRLINMG  120
IDPMTHQPKR DGSNYKSIAS LSHIAEWETA RLEAEARLVQ NRNTYNNNDG SKNNKNNPHQ  180
RPNTNLQQIP CLDILKAWQM SCTKSLPTIN DISPILLDGF LMGTKVCNSP TPSTFNNEQT  240
TEVGEEDPFP FDDTITKDND IQTEFSIIEG LAELFPEYGC SPNSGNYSMG VQMDSHLDSC  300
FGNSEENKNN WNNIAHLVMT SPIESPLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-29121165108B-MYB
1h8a_C7e-291211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006344330.10.0PREDICTED: transcription factor MYB51-like
TrEMBLM0ZSU00.0M0ZSU0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000073360.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.22e-85myb domain protein 16