PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_13254.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | B3 | ||||||||
Protein Properties | Length: 245aa MW: 28178.6 Da PI: 10.5735 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.2 | 1.1e-11 | 145 | 208 | 20 | 87 |
HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 20 kkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 fa+++g+ ++ +++l+de+ r W v+l k + r+ ++kGW +F +an +++gD F+l+++ Sme2.5_13254.1_g00001.1 145 EAFARRNGLMRRC--KMMLKDERRRLWPVEL--GKVGPRFAIKKGWPQFREANAVQVGDPYKFELIDN 208 5799999999666..7***************..99999**************************9874 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.7E-5 | 86 | 140 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.4E-6 | 92 | 220 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.9E-13 | 145 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.08E-14 | 146 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.05E-10 | 146 | 209 | No hit | No description |
Pfam | PF02362 | 2.3E-10 | 146 | 208 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.546 | 158 | 219 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MSSHKDFLGV EAANDMPRDR PHFIYTIKHS TISKYMLAAL SLEVDDLRAN ASLHPEEKPN 60 LDANRVSAQG LAMHAPKAHA PAPASANSNS HFVSTIKPYN INRSYLKIPV GFLKYLKGYE 120 HIKRAVLKRG DKKWRIKVNE HRFEEAFARR NGLMRRCKMM LKDERRRLWP VELGKVGPRF 180 AIKKGWPQFR EANAVQVGDP YKFELIDNGI IPIAYFHRKY SGKDAKASEK PLTNINQQLV 240 IYKEN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 7e-62 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009597679.1 | 1e-47 | PREDICTED: B3 domain-containing protein REM17-like isoform X3 | ||||
Refseq | XP_016469440.1 | 1e-47 | PREDICTED: B3 domain-containing protein REM17-like isoform X3 | ||||
TrEMBL | A0A1S3ZYC9 | 3e-46 | A0A1S3ZYC9_TOBAC; B3 domain-containing protein REM17-like isoform X3 | ||||
STRING | XP_009597666.1 | 7e-46 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31630.1 | 4e-08 | B3 family protein |