PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_12868.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 257aa MW: 28949.2 Da PI: 6.799 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.9 | 7.8e-21 | 94 | 143 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp + r++lg+f tae+Aa+a+++a+k+++g Sme2.5_12868.1_g00001.1 94 KYRGIRQRP-WGKWAAEIRDPQ----KgVRVWLGTFNTAEDAARAYDQAAKRIRG 143 8********.**********94....35************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 7.8E-40 | 94 | 157 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-33 | 94 | 153 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.236 | 94 | 151 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.38E-23 | 94 | 153 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.2E-14 | 94 | 143 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.07E-32 | 94 | 150 | No hit | No description |
PRINTS | PR00367 | 1.1E-11 | 95 | 106 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 117 | 133 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008219 | Biological Process | cell death | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051707 | Biological Process | response to other organism | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MCGGAIISDY EPVGNFYRKL SARDLWAELD PVSDYWSSSS SSSTVGKADS SHSPTIHSVD 60 KPKKSDSGES NQLRKGRSVK VEKEMSEPRQ RKNKYRGIRQ RPWGKWAAEI RDPQKGVRVW 120 LGTFNTAEDA ARAYDQAAKR IRGDKAKLNF PHSPPTPTPS PPAKRQCIDP PPPAFLESSH 180 IMSDHNSSLG YQNQTPYYPM EMPAVNDDYE LKEQISNLES FLELEPADSS QFSGMVHSDP 240 LNVFLMEDFA STQQQFY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-24 | 95 | 151 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00109 | PBM | Transfer from AT3G16770 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB085820 | 1e-140 | AB085820.1 Solanum tuberosum cip353 mRNA for AP2/ERF-domain protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001305557.1 | 1e-140 | ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | M1BEF0 | 1e-142 | M1BEF0_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400043311 | 1e-143 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 7e-43 | ethylene-responsive element binding protein |