PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_12113.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | G2-like | ||||||||
Protein Properties | Length: 123aa MW: 14247.4 Da PI: 10.9094 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 75 | 1e-23 | 61 | 114 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt eLH+rFv +v+ LGG+ AtP +i+++m+ g+++++++ HLQ YR Sme2.5_12113.1_g00001.1 61 PRMRWTDELHARFVAVVNGLGGPRAATPMAIMKHMEHMGISRQQIRAHLQAYRQ 114 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-19 | 59 | 115 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.2E-12 | 59 | 116 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.4E-18 | 61 | 115 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.1E-6 | 62 | 113 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MFPRSHFPVV KNDNFELVFN VDDTKRYDPY IFNFNLVTHQ YRQRVDQRPS VVASASHGKP 60 PRMRWTDELH ARFVAVVNGL GGPRAATPMA IMKHMEHMGI SRQQIRAHLQ AYRQKLAAGY 120 PSK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14605 | 4 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69580.1 | 3e-14 | G2-like family protein |