PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_11481.1_g00001.1 | ||||||||
Common Name | ARF8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ARF | ||||||||
Protein Properties | Length: 889aa MW: 98553.9 Da PI: 6.5801 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.6 | 1.4e-24 | 128 | 229 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 f+k+lt sd++++g +++p++ ae+ +++++++ +l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD v Sme2.5_11481.1_g00001.1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldySQQPPCQ-ELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDAV 212 99*****************************97677775.9********************************************* PP EEEE-SSSEE..EEEEE-S CS B3 81 vFkldgrsefelvvkvfrk 99 +F ++++ +l+++++r+ Sme2.5_11481.1_g00001.1 213 IFI--WNENNQLLLGIRRA 229 ***..7888889****997 PP | |||||||
2 | Auxin_resp | 120.9 | 9.6e-40 | 254 | 337 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k+ ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k Sme2.5_11481.1_g00001.1 254 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYAKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 337 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.44E-49 | 113 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.1E-44 | 121 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.16E-23 | 127 | 228 | No hit | No description |
SMART | SM01019 | 4.3E-25 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-22 | 128 | 229 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.042 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.1E-34 | 254 | 337 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.4E-6 | 746 | 839 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 2.35E-6 | 750 | 829 | No hit | No description |
PROSITE profile | PS51745 | 21.963 | 755 | 842 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 889 aa Download sequence Send to blast |
MRVSSSGFNP QPEEGEKKCL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE 60 VDAHIPNYPG LPPQLICQLH NLTMHADVET DEVYAQMTLQ PLSPQEQKDV CLLPAELGIP 120 SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYS QQPPCQELIA KDLHGNEWKF 180 RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD AVIFIWNENN QLLLGIRRAN RPQTVMPSSV 240 LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYAKAVYH TRISVGMRFR 300 MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVKVGW DESTAGDRQP RVSLWEIEPL 360 TTFPMYPSPF SLRLKRPWPS GLPSLTGFPN GDMAMNSPLS WLRGDMGDQG MQSLNFQGFG 420 VTPFMQPRMD ASLLGLQPDI LQTMAALDPS KLANQSLMQF QQSIPNSSAS LSQSQMLQPS 480 HSHQNLIQGF SENHLISQAQ MLQQQLQRRQ NFNDQQQLLQ PQLQQHQEVN SQFQHQQRTK 540 AISSLSQMAS VTQPHLSHLP VLSSTGSQQT FSDMLGTHVN SSSNSNMQSL LSSFSRDGAP 600 AVLNMHETHP LVSSSSSSKR IALESQLPSR VTPFVLSQPE NVIAPNTKVS DLSSLLPPFP 660 GRESFSDYKG AEDSQSNALY GFTDSLNILQ TGMSNMKGSS GDNGSLSIPY AISTFTSTVG 720 NEYPLNSDMT ASSCVDESGF LQSSENGDQA NQTNRIFVKV QKSGSFGRSL DISKFSSYHE 780 LRSELARMFG LEGLLEDPER SGWQLVIVDR ENDVLLLGDD PWQEFVNNVW YIKILSPYEV 840 QQMGKEGLDL PNGVRTQRLP GNVNGCDDYM NQKGSRNTMN GIPLGSLDY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-162 | 16 | 358 | 47 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00033 | PBM | Transfer from AT5G37020 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ597628 | 0.0 | FJ597628.1 Solanum melongena ARF8 (ARF8) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015082269.1 | 0.0 | auxin response factor 6-like isoform X3 | ||||
Swissprot | A2X1A1 | 0.0 | ARFF_ORYSI; Auxin response factor 6 | ||||
Swissprot | Q6H6V4 | 0.0 | ARFF_ORYSJ; Auxin response factor 6 | ||||
TrEMBL | B9VRZ6 | 0.0 | B9VRZ6_SOLME; Auxin response factor | ||||
STRING | PGSC0003DMT400041127 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2368 | 24 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | auxin response factor 6 |
Publications ? help Back to Top | |||
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