PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_11221.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 336aa    MW: 37802.4 Da    PI: 5.9019
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_11221.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding483e-151461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             rgrWT+eEd+ll +++   G g+W++ ++  g+ R++k+c++rw +yl
  Sme2.5_11221.1_g00002.1 14 RGRWTAEEDQLLSNYILSNGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                             8*******************************99************97 PP
2Myb_DNA-binding521.7e-1667112148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              rg+ T +E+++++++++ lG++ W++Ia +++ gRt++++k++w+++l
  Sme2.5_11221.1_g00002.1  67 RGNITSQEEDIIIKLHATLGNR-WSLIAGHLP-GRTDNEIKNYWNSHL 112
                              7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-20564IPR009057Homeodomain-like
PROSITE profilePS5129415.397961IPR017930Myb domain
SuperFamilySSF466893.02E-2711108IPR009057Homeodomain-like
SMARTSM007171.8E-101363IPR001005SANT/Myb domain
PfamPF002492.0E-131461IPR001005SANT/Myb domain
CDDcd001672.46E-71661No hitNo description
PROSITE profilePS5129424.55462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.9E-2565116IPR009057Homeodomain-like
SMARTSM007171.2E-1566114IPR001005SANT/Myb domain
PfamPF002491.6E-1467112IPR001005SANT/Myb domain
CDDcd001676.67E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009813Biological Processflavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MGRAPCCEKV GLKRGRWTAE EDQLLSNYIL SNGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRSDVKRGNI TSQEEDIIIK LHATLGNRWS LIAGHLPGRT DNEIKNYWNS HLSRKVESLR  120
IPSDEKLPKA VVDLAKKGTL KPIKHCRKRI RRSKNSQEEI SGNGATVPMP STPKVEKEAL  180
SSTISSCVMP ATELMQQHVA NLAAPNSRED QTSHTSDSGM EWLRLEEIDD DPNFILGQLG  240
DPQEEVSNKA GNSCCINEGS EKVASDGKVE WDWQDDHELV WPAPPWELET NQDNIIPSWS  300
LWDTTDTDLL QNCTNNHEAT TVENQNRTAL VSWLLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23121185110B-MYB
1h8a_C3e-231211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006349204.11e-158PREDICTED: transcription factor MYB12
TrEMBLM1AI581e-157M1AI58_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000233221e-158(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.12e-75myb domain protein 12